Escher: a web application for building, sharing, and embedding data-rich visualizations of biological pathways ZA King, A Dräger, A Ebrahim, N Sonnenschein, NE Lewis, BO Palsson PLoS computational biology 11 (8), e1004321, 2015 | 400 | 2015 |
Solo: doublet identification in single-cell RNA-seq via semi-supervised deep learning NJ Bernstein, NL Fong, I Lam, MA Roy, DG Hendrickson, DR Kelley Cell systems 11 (1), 95-101. e5, 2020 | 157 | 2020 |
Genetic architecture of 11 organ traits derived from abdominal MRI using deep learning Y Liu, N Basty, B Whitcher, JD Bell, EP Sorokin, N van Bruggen, ... Elife 10, e65554, 2021 | 147 | 2021 |
Quantitative assessment of protein function prediction from metagenomics shotgun sequences ED Harrington, AH Singh, T Doerks, I Letunic, C Von Mering, LJ Jensen, ... Proceedings of the National Academy of Sciences 104 (35), 13913-13918, 2007 | 91 | 2007 |
Performance evaluation of UDP lite for cellular video A Singh, A Konrad, AD Joseph Proceedings of the 11th international workshop on Network and operating …, 2001 | 89 | 2001 |
The population dynamics of bacteria in physically structured habitats and the adaptive virtue of random motility Y Wei, X Wang, J Liu, I Nememan, AH Singh, H Weiss, BR Levin Proceedings of the National Academy of Sciences 108 (10), 4047-4052, 2011 | 82 | 2011 |
Modularity of stress response evolution AH Singh, DM Wolf, P Wang, AP Arkin Proceedings of the National Academy of Sciences 105 (21), 7500-7505, 2008 | 75 | 2008 |
High-throughput screening for improved microbial cell factories, perspective and promise MD Leavell, AH Singh, BB Kaufmann-Malaga Current Opinion in Biotechnology 62, 22-28, 2020 | 71 | 2020 |
Two-Drug Antimicrobial Chemotherapy: A Mathematical Model and Experiments with Mycobacterium marinum P Ankomah, BR Levin PLoS pathogens 8 (1), e1002487, 2012 | 71 | 2012 |
Discovering functional novelty in metagenomes: examples from light-mediated processes AH Singh, T Doerks, I Letunic, J Raes, P Bork Journal of bacteriology 191 (1), 32-41, 2009 | 69 | 2009 |
Genetic evidence for different adiposity phenotypes and their opposing influences on ectopic fat and risk of cardiometabolic disease S Martin, M Cule, N Basty, J Tyrrell, RN Beaumont, AR Wood, TM Frayling, ... Diabetes 70 (8), 1843-1856, 2021 | 64 | 2021 |
Protein function space: viewing the limits or limited by our view? J Raes, ED Harrington, AH Singh, P Bork Current opinion in structural biology 17 (3), 362-369, 2007 | 51 | 2007 |
Estimating the effect of liver and pancreas volume and fat content on risk of diabetes: a Mendelian randomization study S Martin, EP Sorokin, EL Thomas, N Sattar, M Cule, JD Bell, ... Diabetes Care 45 (2), 460-468, 2022 | 46 | 2022 |
Genotype specification language EH Wilson, S Sagawa, JW Weis, MG Schubert, M Bissell, B Hawthorne, ... ACS synthetic biology 5 (6), 471-478, 2016 | 34 | 2016 |
Pareto optimality explanation of the glycolytic alternatives in nature CY Ng, L Wang, A Chowdhury, CD Maranas Scientific reports 9 (1), 2633, 2019 | 26 | 2019 |
A nuclear complex of rictor and insulin receptor substrate-2 is associated with albuminuria in diabetic mice BK Singh, A Singh, DD Mascarenhas Metabolic syndrome and related disorders 8 (4), 355-363, 2010 | 22 | 2010 |
Analysis of MRI-derived spleen iron in the UK Biobank identifies genetic variation linked to iron homeostasis and hemolysis EP Sorokin, N Basty, B Whitcher, Y Liu, JD Bell, RL Cohen, M Cule, ... The American Journal of Human Genetics 109 (6), 1092-1104, 2022 | 16 | 2022 |
Calcification of the abdominal aorta is an under-appreciated cardiovascular disease risk factor in the general population A Sethi, DL Taylor, JG Ruby, J Venkataraman, E Sorokin, M Cule, ... Frontiers in Cardiovascular Medicine 9, 1003246, 2022 | 14 | 2022 |
Precision MRI phenotyping enables detection of small changes in body composition for longitudinal cohorts B Whitcher, M Thanaj, M Cule, Y Liu, N Basty, EP Sorokin, JD Bell, ... Scientific Reports 12 (1), 3748, 2022 | 11 | 2022 |
Early adoption of new drug treatments: the role of continuing medical education and physician adaptivity D Mascarenhas, BK Singh, AH Singh, S Vander Veer Critical pathways in cardiology 6 (1), 30-40, 2007 | 11 | 2007 |