James Costello
James Costello
University of Colorado Anschutz Medical Campus
Verified email at - Homepage
Cited by
Cited by
Evolution of genes and genomes on the Drosophila phylogeny
AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ...
Nature 450 (7167), 203-18, 2007
Wisdom of crowds for robust gene network inference
D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ...
Nature methods 9 (8), 796-804, 2012
Next-generation machine learning for biological networks
DM Camacho, KM Collins, RK Powers, JC Costello, JJ Collins
Cell 173 (7), 1581-1592, 2018
A community effort to assess and improve drug sensitivity prediction algorithms
JC Costello, LM Heiser, E Georgii, M Gönen, MP Menden, NJ Wang, ...
Nature biotechnology 32 (12), 1202-1212, 2014
Bactericidal antibiotics induce mitochondrial dysfunction and oxidative damage in mammalian cells
S Kalghatgi, CS Spina, JC Costello, M Liesa, JR Morones-Ramirez, ...
Science translational medicine 5 (192), 192ra85-192ra85, 2013
Transcriptional profiling of stroma from inflamed and resting lymph nodes defines immunological hallmarks
D Malhotra, AL Fletcher, J Astarita, V Lukacs-Kornek, P Tayalia, ...
Nature immunology 13 (5), 499-510, 2012
Oncogenic NRAS signaling differentially regulates survival and proliferation in melanoma
LN Kwong, JC Costello, H Liu, S Jiang, TL Helms, AE Langsdorf, ...
Nature medicine 18 (10), 1503-1510, 2012
TERT promoter mutations and telomerase reactivation in urothelial cancer
S Borah, L Xi, AJ Zaug, NM Powell, GM Dancik, SB Cohen, JC Costello, ...
Science 347 (6225), 1006-1010, 2015
Monocytic subclones confer resistance to venetoclax-based therapy in patients with acute myeloid leukemia
S Pei, DA Pollyea, A Gustafson, BM Stevens, M Minhajuddin, R Fu, ...
Cancer discovery 10 (4), 536-551, 2020
Tumor-derived cell lines as molecular models of cancer pharmacogenomics
A Goodspeed, LM Heiser, JW Gray, JC Costello
Molecular Cancer Research 14 (1), 3-13, 2016
A community computational challenge to predict the activity of pairs of compounds
M Bansal, J Yang, C Karan, MP Menden, JC Costello, H Tang, G Xiao, ...
Nature biotechnology 32 (12), 1213-1222, 2014
Intrathymic programming of effector fates in three molecularly distinct γδ T cell subtypes
K Narayan, KE Sylvia, N Malhotra, CC Yin, G Martens, T Vallerskog, ...
Nature immunology 13 (5), 511-518, 2012
GSEA-InContext: identifying novel and common patterns in expression experiments
RK Powers, A Goodspeed, H Pielke-Lombardo, AC Tan, JC Costello
Bioinformatics 34 (13), i555-i564, 2018
Crowdsourcing biomedical research: leveraging communities as innovation engines
J Saez-Rodriguez, JC Costello, SH Friend, MR Kellen, L Mangravite, ...
Nature Reviews Genetics 17 (8), 470-486, 2016
Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open …
J Guinney, T Wang, TD Laajala, KK Winner, JC Bare, EC Neto, SA Khan, ...
The Lancet Oncology 18 (1), 132-142, 2017
“Reverse ecology” and the power of population genomics
YF Li, JC Costello, AK Holloway, MW Hahn
Evolution 62 (12), 2984-2994, 2008
Concurrent alterations in TERT, KDM6A, and the BRCA pathway in bladder cancer
ML Nickerson, GM Dancik, KM Im, MG Edwards, S Turan, J Brown, ...
Clinical Cancer Research 20 (18), 4935-4948, 2014
Transcriptomes of the B and T lineages compared by multiplatform microarray profiling
MW Painter, S Davis, RR Hardy, D Mathis, C Benoist, Y Zhou, S Shinton, ...
The Journal of Immunology 186 (5), 3047-3057, 2011
Transcriptome analysis identifies regulators of hematopoietic stem and progenitor cells
R Gazit, BS Garrison, TN Rao, T Shay, J Costello, J Ericson, F Kim, ...
Stem cell reports 1 (3), 266-280, 2013
Inhibition of the CCL2 receptor, CCR2, enhances tumor response to immune checkpoint therapy
MM Tu, HA Abdel-Hafiz, RT Jones, A Jean, KJ Hoff, JE Duex, ...
Communications Biology 3 (1), 720, 2020
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