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Michele Filosi
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The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance
C Wang, B Gong, PR Bushel, J Thierry-Mieg, D Thierry-Mieg, J Xu, ...
Nature biotechnology 32 (9), 926-932, 2014
5122014
Minerva and minepy: a C engine for the MINE suite and its R, Python and MATLAB wrappers
D Albanese, M Filosi, R Visintainer, S Riccadonna, G Jurman, ...
Bioinformatics 29 (3), 407-408, 2013
2122013
The person-to-person transmission landscape of the gut and oral microbiomes
M Valles-Colomer, A Blanco-Míguez, P Manghi, F Asnicar, L Dubois, ...
Nature 614 (7946), 125-135, 2023
1272023
Biomarkers for response in major depression: comparing paroxetine and venlafaxine from two randomised placebo-controlled clinical studies
L Carboni, DJ McCarthy, B Delafont, M Filosi, E Ivanchenko, E Ratti, ...
Translational psychiatry 9 (1), 182, 2019
692019
The HIM glocal metric and kernel for network comparison and classification
G Jurman, R Visintainer, M Filosi, S Riccadonna, C Furlanello
2015 IEEE international conference on data science and advanced analytics …, 2015
612015
Stability indicators in network reconstruction
M Filosi, R Visintainer, S Riccadonna, G Jurman, C Furlanello
PloS one 9 (2), e89815, 2014
222014
Transcriptome signatures from discordant sibling pairs reveal changes in peripheral blood immune cell composition in Autism Spectrum Disorder
M Filosi, T Kam-Thong, L Essioux, P Muglia, E Trabetti, W Spooren, ...
Translational Psychiatry 10 (1), 106, 2020
202020
Graph metrics as summary statistics for Approximate Bayesian Computation with application to network model parameter estimation
D Fay, AW Moore, K Brown, M Filosi, G Jurman
Journal of complex networks 3 (1), 52-83, 2015
202015
DTW-MIC coexpression networks from time-course data
S Riccadonna, G Jurman, R Visintainer, M Filosi, C Furlanello
Plos one 11 (3), e0152648, 2016
19*2016
A machine learning pipeline for discriminant pathways identification
A Barla, G Jurman, R Visintainer, M Squillario, M Filosi, S Riccadonna, ...
Computational Intelligence Methods for Bioinformatics and Biostatistics: 8th …, 2012
102012
The Italian autism network (ITAN): a resource for molecular genetics and biomarker investigations
P Muglia, M Filosi, L Da Ros, T Kam-Thong, F Nardocci, E Trabetti, E Ratti, ...
BMC psychiatry 18, 1-9, 2018
92018
A glocal distance for network comparison
G Jurman, R Visintainer, S Riccadonna, M Filosi, C Furlanello
arXiv preprint arXiv:1201.2931, 2012
92012
cmine, minerva & minepy: a C engine for the MINE suite and its R and Python wrappers
D Albanese, M Filosi, R Visintainer, S Riccadonna, G Jurman, ...
stat 1050, 21, 2012
82012
Stability indicators in network reconstruction
G Jurman, M Filosi, R Visintainer, S Riccadonna, C Furlanello
arXiv preprint arXiv:1209.1654, 2012
52012
Natural SINEUP RNAs in autism spectrum disorders: RAB11B-AS1 dysregulation in a neuronal CHD8 suppression model leads to RAB11B protein increase
G Zarantonello, M Arnoldi, M Filosi, T Tebaldi, G Spirito, A Barbieri, ...
Frontiers in Genetics 12, 745229, 2021
42021
A machine learning pipeline for identification of discriminant pathways
A Barla, G Jurman, R Visintainer, M Squillario, M Filosi, S Riccadonna, ...
Springer Handbook of Bio-/Neuroinformatics, 951-968, 2014
42014
Differential network analysis and graph classification: a glocal approach
G Jurman, M Filosi, S Riccadonna, R Visintainer, C Furlanello
Dynamics of Mathematical Models in Biology: Bringing Mathematics to Life, 17-30, 2016
32016
Increased levels of the Parkinson’s disease-associated gene ITPKB correlate with higher expression levels of α-synuclein, independent of mutation Status
F Di Leva, M Filosi, L Oyston, E Silvestri, A Picard, AA Lavdas, ...
International Journal of Molecular Sciences 24 (3), 1984, 2023
22023
The interplay between oxidative stress and inflammation supports autistic-related behaviors in mice
L Pangrazzi, E Cerilli, L Balasco, C Tobia, GM Dall'O', G Chelini, S Perini, ...
bioRxiv, 2023.09. 11.557109, 2023
22023
Performing highly parallelized and reproducible GWAS analysis on biobank-scale data
S Schönherr, JF Schachtl-Riess, S Di Maio, M Filosi, M Mark, C Lamina, ...
NAR Genomics and Bioinformatics 6 (1), lqae015, 2024
12024
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