Mona Alshahrani

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Robert HoehndorfKing Abdullah University of Science and TechnologyVerified email at kaust.edu.sa
Núria Queralt-RosinachLeiden University Medical CenterVerified email at lumc.nl
Rutger A. VosNaturalis Biodiversity CenterVerified email at naturalis.nl
Marco SchmidtPalmengarten FrankfurtVerified email at stadt-frankfurt.de
Akira R. KinjoDepartment of Mathematics, Universiti Brunei DarussalamVerified email at ubd.edu.bn
Jens KattgeMax Planck Institute for BiogeochemistryVerified email at bgc-jena.mpg.de
Maha A. ThafarComputer Science PhD Candidate at KAUST, Lecturer at Taif University (TU)Verified email at kaust.edu.sa
Sylvia Mota de OliveiraNaturalis Biodiversity CenterVerified email at naturalis.nl
Georgios GkoutosUniversity of Birmingham, College of Medical and Dental SciencesVerified email at bham.ac.uk
Arturo Magana-MoraLead Data Scientist, Saudi AramcoVerified email at kaust.edu.sa
Somayah AlbaradeiPhDVerified email at kaust.edu.sa
Takashi GojoboriDistinguished Professor of KAUST (King Abdullah University of Science and Technology) and ProjectVerified email at kaust.edu.sa
Xin GaoProfessor, Computer Sciences; Associate Director, Computational Bioscience Research CenterVerified email at kaust.edu.sa
Mahmut UludagSoftware Developer, King Abdullah University of Science and TechnologyVerified email at kaust.edu.sa

Mona Alshahrani

National Center for Artificial Intelligence (NCAI), SDAIA, Saudi Arabia

Verified email at kaust.edu.sa

Knowledge graphs neural networks deep learning biomedical imaging biomedical informatics


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Neuro-symbolic representation learning on biological knowledge graphs M Alshahrani, MA Khan, O Maddouri, AR Kinjo, N Queralt-Rosinach, ... Bioinformatics 33 (17), 2723-2730, 2017	114	2017
Semantic Disease Gene Embeddings (SmuDGE): phenotype-based disease gene prioritization without phenotypes M Alshahrani, R Hoehndorf Bioinformatics 34 (17), i901-i907, 2018	44	2018
The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants R Hoehndorf, M Alshahrani, GV Gkoutos, G Gosline, Q Groom, T Hamann, ... Journal of Biomedical Semantics 7 (1), 1-11, 2016	36	2016
DANNP: an efficient artificial neural network pruning tool M Alshahrani, O Soufan, A Magana-Mora, VB Bajic PeerJ Computer Science 3, e137, 2017	15	2017
Application and evaluation of knowledge graph embeddings in biomedical data M Alshahrani, MA Thafar, M Essack PeerJ Computer Science 7, e341, 2021	10	2021
Drug repurposing through joint learning on knowledge graphs and literature M Alshahrani, R Hoehndorf Cold Spring Harbor Laboratory, 2018	6	2018
Knowledge Graph Representation Learning: Approaches and Applications in Biomedicine M AlShahrani	2	2019
Affinity2Vec: drug-target binding affinity prediction through representation learning, graph mining, and machine learning MA Thafar, M Alshahrani, S Albaradei, T Gojobori, M Essack, X Gao Scientific reports 12 (1), 1-18, 2022	1	2022
SPARQL2OWL: Towards Bridging the Semantic Gap Between RDF and OWL. M Alshahrani, H Almashouq, R Hoehndorf ICBO/BioCreative, 2016	1	2016
Combining biomedical knowledge graphs and text to improve predictions for drug-target interactions and drug-indications M Alshahrani, A Almansour, A Alkhaldi, MA Thafar, M Uludag, M Essack, ... PeerJ 10, e13061, 2022		2022
MahaThafar/Affinity2Vec: Drug-target binding affinity prediction using representation learning, graph mining, and machine learning MA Thafar, M Alshahrani, S Albaradei, T Gojobori, M Essack, X Gao Github, 2021		2021
bio-ontology-research-group/multi-drug-embedding: Method for drug repurposing from knowledge graphs and literature M AlShahrani, R Hoehndorf Github, 2018		2018
bio-ontology-research-group/SMUDGE: SmuDGE: Semantic Disease Gene Embeddings M AlShahrani, R Hoehndorf Github, 2017		2017
Additional file 1 of The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants R Hoehndorf, M Alshahrani, G Gkoutos, G Gosline, Q Groom, T Hamann, ...		2016
bio-ontology-research-group/walking-rdf-and-owl: Feature learning over RDF data and OWL ontologies M AlShahrani, O Maddouri, AR Kinjo, N Queralt-Rosinach, R Hoehndorf, ... Github, 2016		2016
Supplementary Material for: The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants R Hoehndorf, M Alshahrani, G Gkoutos, G Gosline, Q Groom, T Hamann, ... Figshare, 2016		2016
Towards an Efficient Artificial Neural Network Pruning and Feature Ranking Tool M AlShahrani		2015

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