Kiyoshi Asai
Kiyoshi Asai
Professor of Computational Biology, University of Tokyo
Verified email at
TitleCited byYear
Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae
JE Galagan, SE Calvo, C Cuomo, LJ Ma, JR Wortman, S Batzoglou, ...
Nature 438 (7071), 1105-1115, 2005
Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus
WC Nierman, A Pain, MJ Anderson, JR Wortman, HS Kim, J Arroyo, ...
Nature 438 (7071), 1151, 2005
Genome sequencing and analysis of Aspergillus oryzae
M Machida, K Asai, M Sano, T Tanaka, T Kumagai, G Terai, KI Kusumoto, ...
Nature 438 (7071), 1157-1161, 2005
Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells
Y Kawamura, K Saito, T Kin, Y Ono, K Asai, T Sunohara, TN Okada, ...
Nature 453 (7196), 793-797, 2008
A regulatory circuit for piwi by the large Maf gene traffic jam in Drosophila
K Saito, S Inagaki, T Mituyama, Y Kawamura, Y Ono, E Sakota, H Kotani, ...
Nature 461 (7268), 1296-1299, 2009
The voltage-sensitive sodium channel is a bell-shaped molecule with several cavities
C Sato, Y Ueno, K Asai, K Takahashi, M Sato, A Engel, Y Fujiyoshi
Nature 409 (6823), 1047-1051, 2001
Characterization of endogenous human Argonautes and their miRNA partners in RNA silencing
A Azuma-Mukai, H Oguri, T Mituyama, ZR Qian, K Asai, H Siomi, ...
Proceedings of the National Academy of Sciences 105 (23), 7964-7969, 2008
Marginalized kernels for biological sequences
K Tsuda, T Kin, K Asai
Bioinformatics 18 (suppl_1), S268-S275, 2002
CentroidFold: a web server for RNA secondary structure prediction
K Sato, M Hamada, K Asai, T Mituyama
Nucleic acids research 37 (suppl_2), W277-W280, 2009
Prediction of RNA secondary structure using generalized centroid estimators
M Hamada, H Kiryu, K Sato, T Mituyama, K Asai
Bioinformatics 25 (4), 465-473, 2009
PBSIM: PacBio reads simulator—toward accurate genome assembly
Y Ono, K Asai, M Hamada
Bioinformatics 29 (1), 119-121, 2013
Prediction of protein secondary structure by the hidden Markov model
K Asai, S Hayamizu, K Handa
Bioinformatics 9 (2), 141-146, 1993
Genomics of Aspergillus oryzae
T Kobayashi, K Abe, K Asai, K Gomi, PR Juvvadi, M Kato, K Kitamoto, ...
Bioscience, biotechnology, and biochemistry 71 (3), 646-670, 2007
fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences
T Kin, K Yamada, G Terai, H Okida, Y Yoshinari, Y Ono, A Kojima, ...
Nucleic acids research 35 (suppl_1), D145-D148, 2007
IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming
K Sato, Y Kato, M Hamada, T Akutsu, K Asai
Bioinformatics 27 (13), i85-i93, 2011
The Functional RNA Database 3.0: databases to support mining and annotation of functional RNAs
T Mituyama, K Yamada, E Hattori, H Okida, Y Ono, G Terai, A Yoshizawa, ...
Nucleic acids research 37 (suppl_1), D89-D92, 2009
The em algorithm for kernel matrix completion with auxiliary data
K Tsuda, S Akaho, K Asai
Journal of machine learning research 4 (May), 67-81, 2003
Selective integration of multiple biological data for supervised network inference
T Kato, K Tsuda, K Asai
Bioinformatics 21 (10), 2488-2495, 2005
A fast structural multiple alignment method for long RNA sequences
Y Tabei, H Kiryu, T Kin, K Asai
BMC bioinformatics 9 (1), 33, 2008
Multi-task learning via conic programming
T Kato, H Kashima, M Sugiyama, K Asai
Advances in Neural Information Processing Systems, 737-744, 2008
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