| Modeling host–parasite coevolution: a nested approach based on mechanistic models MA Gilchrist, A Sasaki Journal of Theoretical Biology 218 (3), 289-308, 2002 | 236 | 2002 |
| An age-structured model of HIV infection that allows for variations in the production rate of viral particles and the death rate of productively infected cells PW Nelson, MA Gilchrist, D Coombs, JM Hyman, AS Perelson Mathematical Biosciences & Engineering 1 (2), 267-288, 2004 | 168 | 2004 |
| Explaining complex codon usage patterns with selection for translational efficiency, mutation bias, and genetic drift P Shah, MA Gilchrist Proceedings of the National Academy of Sciences 108 (25), 10231-10236, 2011 | 164 | 2011 |
| Evolution of virulence: interdependence, constraints, and selection using nested models MA Gilchrist, D Coombs Theoretical population biology 69 (2), 145-153, 2006 | 160 | 2006 |
| Evaluating the importance of within-and between-host selection pressures on the evolution of chronic pathogens D Coombs, MA Gilchrist, CL Ball Theoretical population biology 72 (4), 576-591, 2007 | 154 | 2007 |
| Modeling within-host HIV-1 dynamics and the evolution of drug resistance: trade-offs between viral enzyme function and drug susceptibility L Rong, MA Gilchrist, Z Feng, AS Perelson Journal of Theoretical biology 247 (4), 804-818, 2007 | 154 | 2007 |
| Effect of correlated tRNA abundances on translation errors and evolution of codon usage bias P Shah, MA Gilchrist PLoS genetics 6 (9), e1001128, 2010 | 122 | 2010 |
| A model of protein translation including codon bias, nonsense errors, and ribosome recycling MA Gilchrist, A Wagner Journal of theoretical biology 239 (4), 417-434, 2006 | 116 | 2006 |
| Optimizing within-host viral fitness: infected cell lifespan and virion production rate MA Gilchrist, D Coombs, AS Perelson Journal of theoretical biology 229 (2), 281-288, 2004 | 111 | 2004 |
| The h subunit of eIF3 promotes reinitiation competence during translation of mRNAs harboring upstream open reading frames B Roy, JN Vaughn, BH Kim, F Zhou, MA Gilchrist, AG Von Arnim Rna 16 (4), 748-761, 2010 | 107 | 2010 |
| A statistical framework for combining and interpreting proteomic datasets MA Gilchrist, LA Salter, A Wagner Bioinformatics 20 (5), 689-700, 2004 | 86 | 2004 |
| Modeling within-host evolution of HIV: mutation, competition and strain replacement CL Ball, MA Gilchrist, D Coombs Bulletin of mathematical biology 69, 2361-2385, 2007 | 69 | 2007 |
| Nonlinear developmental processes as sources of dominance MA Gilchrist, HF Nijhout Genetics 159 (1), 423-432, 2001 | 64 | 2001 |
| Identifying fitness and optimal life‐history strategies for an asexual filamentous fungus MA Gilchrist, DL Sulsky, A Pringle Evolution 60 (5), 970-979, 2006 | 58 | 2006 |
| Combining models of protein translation and population genetics to predict protein production rates from codon usage patterns MA Gilchrist Molecular Biology and Evolution 24 (11), 2362-2372, 2007 | 49 | 2007 |
| Estimating gene expression and codon-specific translational efficiencies, mutation biases, and selection coefficients from genomic data alone MA Gilchrist, WC Chen, P Shah, CL Landerer, R Zaretzki Genome biology and evolution 7 (6), 1559-1579, 2015 | 44 | 2015 |
| Measuring and detecting molecular adaptation in codon usage against nonsense errors during protein translation MA Gilchrist, P Shah, R Zaretzki Genetics 183 (4), 1493-1505, 2009 | 34 | 2009 |
| Calibrating a molecular clock from phylogeographic data: moments and likelihood estimators MJ Hickerson, MA Gilchrist, N Takebayashi Evolution 57 (10), 2216-2225, 2003 | 33 | 2003 |
| Optimal viral production D Coombs, MA Gilchrist, J Percus, AS Perelson Bulletin of Mathematical Biology 65 (6), 1003-1023, 2003 | 30 | 2003 |
| Methods for determining single nucleotide variations X Huang, M Gilchrist, L Bentley, H Rienhoff US Patent App. 09/792,413, 2001 | 29 | 2001 |
