| Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences J Goecks, A Nekrutenko, J Taylor Genome biology 11 (8), 1-13, 2010 | 3706 | 2010 |
| The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update E Afgan, D Baker, M Van den Beek, D Blankenberg, D Bouvier, M Čech, ... Nucleic acids research 44 (W1), W3-W10, 2016 | 2566 | 2016 |
| Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. International Chicken Genome Sequencing Consortium Nature 432 (7018), 695-716, 2004 | 2417 | 2004 |
| Galaxy: a platform for interactive large-scale genome analysis B Giardine, C Riemer, RC Hardison, R Burhans, L Elnitski, P Shah, ... Genome research 15 (10), 1451-1455, 2005 | 2205 | 2005 |
| Genome sequence of the Brown Norway rat yields insights into mammalian evolution RA Gibbs, L Pachter Nature 428 (6982), 493-521, 2004 | 2201 | 2004 |
| Galaxy: a web‐based genome analysis tool for experimentalists D Blankenberg, GV Kuster, N Coraor, G Ananda, R Lazarus, M Mangan, ... Current protocols in molecular biology 89 (1), 19.10. 1-19.10. 21, 2010 | 1615 | 2010 |
| Manipulation of FASTQ data with Galaxy D Blankenberg, A Gordon, G Von Kuster, N Coraor, J Taylor, ... Bioinformatics 26 (14), 1783-1785, 2010 | 608 | 2010 |
| Ten simple rules for reproducible computational research GK Sandve, A Nekrutenko, J Taylor, E Hovig PLoS Comput Biol 9 (10), e1003285, 2013 | 534 | 2013 |
| Evolutionary analyses of the human genome WH Li, Z Gu, H Wang, A Nekrutenko Nature 409 (6822), 847-849, 2001 | 505 | 2001 |
| Complete Khoisan and Bantu genomes from southern Africa SC Schuster, W Miller, A Ratan, LP Tomsho, B Giardine, LR Kasson, ... Nature 463 (7283), 943-947, 2010 | 461 | 2010 |
| Transposable elements are found in a large number of human protein-coding genes A Nekrutenko, WH Li TRENDS in Genetics 17 (11), 619-621, 2001 | 458 | 2001 |
| Next-generation sequencing data interpretation: enhancing reproducibility and accessibility A Nekrutenko, J Taylor Nature Reviews Genetics 13 (9), 667-672, 2012 | 295 | 2012 |
| 28-way vertebrate alignment and conservation track in the UCSC Genome Browser W Miller, K Rosenbloom, RC Hardison, M Hou, J Taylor, B Raney, ... Genome research 17 (12), 1797-1808, 2007 | 288 | 2007 |
| The KA/KS ratio test for assessing the protein-coding potential of genomic regions: an empirical and simulation study A Nekrutenko, KD Makova, WH Li Genome research 12 (1), 198-202, 2002 | 237 | 2002 |
| Comparative genomics W Miller, KD Makova, A Nekrutenko, RC Hardison Annu. Rev. Genomics Hum. Genet. 5, 15-56, 2004 | 228 | 2004 |
| Galaxy CloudMan: delivering cloud compute clusters E Afgan, D Baker, N Coraor, B Chapman, A Nekrutenko, J Taylor BMC bioinformatics 11 (12), 1-6, 2010 | 198 | 2010 |
| Dissemination of scientific software with Galaxy ToolShed D Blankenberg, G Von Kuster, E Bouvier, D Baker, E Afgan, N Stoler, ... Genome biology 15 (2), 1-3, 2014 | 183 | 2014 |
| Maternal age effect and severe germ-line bottleneck in the inheritance of human mitochondrial DNA B Rebolledo-Jaramillo, MSW Su, N Stoler, JA McElhoe, B Dickins, ... Proceedings of the National Academy of Sciences 111 (43), 15474-15479, 2014 | 169 | 2014 |
| Assessment of compositional heterogeneity within and between eukaryotic genomes A Nekrutenko, WH Li Genome Research 10 (12), 1986-1995, 2000 | 159 | 2000 |
| A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly D Blankenberg, J Taylor, I Schenck, J He, Y Zhang, M Ghent, ... Genome research 17 (6), 960-964, 2007 | 150 | 2007 |
