Wataru Iwasaki

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Masaki MIYANatural History Museum and Institute, ChibaVerified email at chiba-muse.or.jp
Tsukasa FukunagaAssociate Professor, Waseda Institute for Advanced Study, Waseda UniversityVerified email at aoni.waseda.jp
SATO, Yukuto Ph. D.Senior Lecturer; Research Laboratory Center, Faculty of Medicine, University of the RyukyusVerified email at lab.u-ryukyu.ac.jp
Haruka OzakiBioinformatics Laboratory, Faculty of Medicine, University of TsukubaVerified email at md.tsukuba.ac.jp
Michio KondohTohoku UniversityVerified email at tohoku.ac.jp
Hirohiko TakeshimaFukui Prefectural UniversityVerified email at g.fpu.ac.jp
Hiroki YAMANAKARyukoku UniversityVerified email at rins.ryukoku.ac.jp
Toshifumi MINAMOTOGraduate School of Human Development and Environment, Kobe UniversityVerified email at people.kobe-u.ac.jp
Hitoshi ArakiHokkaido UniversityVerified email at agr.hokudai.ac.jp
Susumu YoshizawaAssociate Professor, Atmosphere and Ocean Research Institute), The University of Tokyo, JapanVerified email at aori.u-tokyo.ac.jp
Mutsumi NishidaVice President, University of the Ryukyus / Professor Emeritus, The University of TokyoVerified email at aori.u-tokyo.ac.jp
Sira SriswasdiResearch Affairs, Faculty of Medicine, Chulalongkorn University, Bangkok, ThailandVerified email at chula.ac.th
Satoshi HiraokaJapan Agency for Marine-Earth Science and Technology (JAMSTEC)Verified email at jamstec.go.jp
Ching-chia YANGNational Agriculture and Food Research OrganizationVerified email at affrc.go.jp
Salvatore CosentinoResearch Associate, Graduate School of Frontier Sciences, The University of TokyoVerified email at k.u-tokyo.ac.jp
edward francis delongProfessor, University of Hawaii, ManoaVerified email at hawaii.edu
Yohei Kumagai海洋開発研究機構Verified email at aori.u-tokyo.ac.jp
Masahira HattoriRIKEN Waseda Univ.Verified email at edu.k.u-tokyo.ac.jp
Kenshiro OshimaKitasato Univ.Verified email at pharm.kitasato-u.ac.jp
Satoshi YamamotoNAROVerified email at terra.zool.kyoto-u.ac.jp

Wataru Iwasaki

Professor, Department of Integrated Biosciences, the University of Tokyo

Verified email at k.u-tokyo.ac.jp - Homepage

Bioinformatics Genome Evolution Metagenomics Environmental DNA


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MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species M Miya, Y Sato, T Fukunaga, T Sado, JY Poulsen, K Sato, T Minamoto, ... Royal Society open science 2 (7), 150088, 2015	1234	2015
MitoFish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline W Iwasaki, T Fukunaga, R Isagozawa, K Yamada, Y Maeda, TP Satoh, ... Molecular biology and evolution 30 (11), 2531-2540, 2013	777	2013
MitoFish and MiFish pipeline: a mitochondrial genome database of fish with an analysis pipeline for environmental DNA metabarcoding Y Sato, M Miya, T Fukunaga, T Sado, W Iwasaki Molecular biology and evolution 35 (6), 1553-1555, 2018	241	2018
Environmental DNA enables detection of terrestrial mammals from forest pond water M Ushio, H Fukuda, T Inoue, K Makoto, O Kishida, K Sato, K Murata, ... Molecular Ecology Resources 17 (6), e63-e75, 2017	219	2017
Generalist species drive microbial dispersion and evolution S Sriswasdi, C Yang, W Iwasaki Nature communications 8 (1), 1162, 2017	200	2017
A fast likelihood method to reconstruct and visualize ancestral scenarios SA Ishikawa, A Zhukova, W Iwasaki, O Gascuel Molecular biology and evolution 36 (9), 2069-2085, 2019	199	2019
Evolutionary origin of the Scombridae (tunas and mackerels): members of a Paleogene adaptive radiation with 14 other pelagic fish families M Miya, M Friedman, TP Satoh, H Takeshima, T Sado, W Iwasaki, ... PloS one 8 (9), e73535, 2013	193	2013
Functional characterization of flavobacteria rhodopsins reveals a unique class of light-driven chloride pump in bacteria S Yoshizawa, Y Kumagai, H Kim, Y Ogura, T Hayashi, W Iwasaki, ... Proceedings of the National Academy of Sciences 111 (18), 6732-6737, 2014	169	2014
An illustrated manual for environmental DNA research: Water sampling guidelines and experimental protocols T Minamoto, M Miya, T Sado, S Seino, H Doi, M Kondoh, K Nakamura, ... Environmental DNA 3 (1), 8-13, 2021	158	2021
A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators DM Needham, S Yoshizawa, T Hosaka, C Poirier, CJ Choi, ... Proceedings of the National Academy of Sciences 116 (41), 20574-20583, 2019	144	2019
Metagenomics and bioinformatics in microbial ecology: current status and beyond S Hiraoka, C Yang, W Iwasaki Microbes and environments 31 (3), 204-212, 2016	134	2016
CLOCK-controlled polyphonic regulation of circadian rhythms through canonical and noncanonical E-boxes H Yoshitane, H Ozaki, H Terajima, NH Du, Y Suzuki, T Fujimori, N Kosaka, ... Molecular and cellular biology, 2014	124	2014
SonicParanoid: fast, accurate and easy orthology inference S Cosentino, W Iwasaki Bioinformatics 35 (1), 149-151, 2019	122	2019
Demonstration of the potential of environmental DNA as a tool for the detection of avian species M Ushio, K Murata, T Sado, I Nishiumi, M Takeshita, W Iwasaki, M Miya Scientific reports 8 (1), 4493, 2018	109	2018
ADARB1 catalyzes circadian A-to-I editing and regulates RNA rhythm H Terajima, H Yoshitane, H Ozaki, Y Suzuki, S Shimba, S Kuroda, ... Nature genetics 49 (1), 146-151, 2017	97	2017
Somatic primary piRNA biogenesis driven by cis-acting RNA elements and trans-acting Yb H Ishizu, YW Iwasaki, S Hirakata, H Ozaki, W Iwasaki, H Siomi, MC Siomi Cell reports 12 (3), 429-440, 2015	86	2015
Functional D-box sequences reset the circadian clock and drive mRNA rhythms H Yoshitane, Y Asano, A Sagami, S Sakai, Y Suzuki, H Okamura, ... Communications Biology 2 (1), 300, 2019	81	2019
CapR: revealing structural specificities of RNA-binding protein target recognition using CLIP-seq data T Fukunaga, H Ozaki, G Terai, K Asai, W Iwasaki, H Kiryu Genome biology 15, 1-15, 2014	80	2014
Methylocaldum marinum sp. nov., a thermotolerant, methane-oxidizing bacterium isolated from marine sediments, and emended description of the genus Methylocaldum M Takeuchi, Y Kamagata, K Oshima, S Hanada, H Tamaki, K Marumo, ... International Journal of systematic and evolutionary microbiology 64 (Pt_9 …, 2014	75	2014
From β- to α-Proteobacteria: The Origin and Evolution of Rhizobial Nodulation Genes nodIJ S Aoki, M Ito, W Iwasaki Molecular biology and evolution 30 (11), 2494-2508, 2013	74	2013

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