|MitoFish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline|
W Iwasaki, T Fukunaga, R Isagozawa, K Yamada, Y Maeda, TP Satoh, ...
Molecular biology and evolution 30 (11), 2531-2540, 2013
|MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species|
M Miya, Y Sato, T Fukunaga, T Sado, JY Poulsen, K Sato, T Minamoto, ...
Royal Society open science 2 (7), 150088, 2015
|Evolutionary origin of the Scombridae (tunas and mackerels): members of a Paleogene adaptive radiation with 14 other pelagic fish families|
M Miya, M Friedman, TP Satoh, H Takeshima, T Sado, W Iwasaki, ...
PloS one 8 (9), e73535, 2013
|Functional characterization of flavobacteria rhodopsins reveals a unique class of light-driven chloride pump in bacteria|
S Yoshizawa, Y Kumagai, H Kim, Y Ogura, T Hayashi, W Iwasaki, ...
Proceedings of the National Academy of Sciences 111 (18), 6732-6737, 2014
|Environmental DNA enables detection of terrestrial mammals from forest pond water|
M Ushio, H Fukuda, T Inoue, K Makoto, O Kishida, K Sato, K Murata, ...
Molecular Ecology Resources 17 (6), e63-e75, 2017
|CLOCK-controlled polyphonic regulation of circadian rhythms through canonical and noncanonical E-boxes|
H Yoshitane, H Ozaki, H Terajima, NH Du, Y Suzuki, T Fujimori, N Kosaka, ...
Molecular and cellular biology 34 (10), 1776-1787, 2014
|Metagenomics and bioinformatics in microbial ecology: current status and beyond|
S Hiraoka, C Yang, W Iwasaki
Microbes and environments, ME16024, 2016
|Methylocaldum marinum sp. nov., a thermotolerant, methane-oxidizing bacterium isolated from marine sediments, and emended description of the genus Methylocaldum|
M Takeuchi, Y Kamagata, K Oshima, S Hanada, H Tamaki, K Marumo, ...
International Journal of systematic and evolutionary microbiology 64 (9 …, 2014
|CapR: revealing structural specificities of RNA-binding protein target recognition using CLIP-seq data|
T Fukunaga, H Ozaki, G Terai, K Asai, W Iwasaki, H Kiryu
Genome biology 15 (1), 1-15, 2014
|MitoFish and MiFish pipeline: a mitochondrial genome database of fish with an analysis pipeline for environmental DNA metabarcoding|
Y Sato, M Miya, T Fukunaga, T Sado, W Iwasaki
Molecular biology and evolution 35 (6), 1553-1555, 2018
|ADARB1 catalyzes circadian A-to-I editing and regulates RNA rhythm|
H Terajima, H Yoshitane, H Ozaki, Y Suzuki, S Shimba, S Kuroda, ...
Nature genetics 49 (1), 146-151, 2017
|From β- to α-Proteobacteria: The Origin and Evolution of Rhizobial Nodulation Genes nodIJ|
S Aoki, M Ito, W Iwasaki
Molecular biology and evolution 30 (11), 2494-2508, 2013
|BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains|
T Katayama, MD Wilkinson, KF Aoki-Kinoshita, S Kawashima, ...
Journal of biomedical semantics 5 (1), 1-13, 2014
|Rapid pathway evolution facilitated by horizontal gene transfers across prokaryotic lineages|
W Iwasaki, T Takagi
PLoS Genet 5 (3), e1000402, 2009
|Somatic primary piRNA biogenesis driven by cis-acting RNA elements and trans-acting Yb|
H Ishizu, YW Iwasaki, S Hirakata, H Ozaki, W Iwasaki, H Siomi, MC Siomi
Cell reports 12 (3), 429-440, 2015
|Generalist species drive microbial dispersion and evolution|
S Sriswasdi, C Yang, W Iwasaki
Nature communications 8 (1), 1-8, 2017
|A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators|
DM Needham, S Yoshizawa, T Hosaka, C Poirier, CJ Choi, ...
Proceedings of the National Academy of Sciences 116 (41), 20574-20583, 2019
|Demonstration of the potential of environmental DNA as a tool for the detection of avian species|
M Ushio, K Murata, T Sado, I Nishiumi, M Takeshita, W Iwasaki, M Miya
Scientific reports 8 (1), 1-10, 2018
|Reconstruction of highly heterogeneous gene-content evolution across the three domains of life|
W Iwasaki, T Takagi
Bioinformatics 23 (13), i230-i239, 2007
|A fast likelihood method to reconstruct and visualize ancestral scenarios|
SA Ishikawa, A Zhukova, W Iwasaki, O Gascuel
Molecular biology and evolution 36 (9), 2069-2085, 2019