Chiara Damiani

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26 件の論文

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共著者

Alex GraudenziDept. of Informatics, Systems and Communication, Univ. of Milan-Bicocca確認したメールアドレス: unimib.it
Giancarlo MauriProfessor emeritus of Computer Science - University of Milano-Bicocca確認したメールアドレス: unimib.it
Roberto SERRAUniversità di Modena; European Centre for Living Technology, Venice; IAS, Amsterdam確認したメールアドレス: unimore.it
Dario PesciniDepartment of Statistics and Quantitative Methods - University of Milano-Bicocca確認したメールアドレス: unimib.it
Marco VILLANIUniversity of Modena and Reggio Emilia確認したメールアドレス: unimore.it
Marco VanoniUniversity of Milano Bicocca, Professor of Biochemistry and Systems Biology確認したメールアドレス: unimib.it
Riccardo ColomboBioRep S.r.l.確認したメールアドレス: biorep.it
Marzia Di FilippoUniversity of Milano-Bicocca確認したメールアドレス: unimib.it
Lilia AlberghinaEmeritus Professor of Biochemistry, University of Milano-Bicocca確認したメールアドレス: unimib.it
Davide MasperoSingle Cell Genomics Team - Centre Nacional d’Anàlisi Genòmica (CNAG-CRG), Barcelona, Spain確認したメールアドレス: cnag.crg.eu
Marco AntoniottiProfessor of Computer Science, Università degli Studi di Milano-Bicocca確認したメールアドレス: unimib.it
Alessandro FilisettiCIO at Officinae Bio S.r.l.確認したメールアドレス: officinae.bio
Hans WesterhoffUniversity of Amsterdam, VU University Amsterdam, University of Manchester確認したメールアドレス: manchester.ac.uk
Marco S. NobileAssociate Professor, Ca' Foscari University of Venice確認したメールアドレス: unive.it
Paolo CazzanigaAssociate Professor, University of Bergamo確認したメールアドレス: unibg.it
Elena SaccoUniversity of Milano-Bicocca確認したメールアドレス: unimib.it
Sara Molinari, Ph.D.Assistant Professor, University of Maryland College Park確認したメールアドレス: umd.edu
Andrea RoliDept. of Computer Science and Engineering (DISI), Campus of Cesena, Università di Bologna確認したメールアドレス: unibo.it
Giulio CaravagnaCancer Data Science Laboratory, University of Trieste確認したメールアドレス: units.it
Daniela BesozziAssociate Professor, University of Milano-Bicocca確認したメールアドレス: unimib.it

フォロー

Chiara Damiani

Department of Biotechnology and Biosciences

確認したメールアドレス: unimib.it - ホームページ

Computational Systems Biology Metabolic Network modeling Omics data integration Single-cell RNAseq data analysis


タイトル引用回数順公開年順タイトル順	引用先引用先	年
Integration of single-cell RNA-seq data into population models to characterize cancer metabolism C Damiani, D Maspero, M Di Filippo, R Colombo, D Pescini, A Graudenzi, ... PLoS computational biology 15 (2), e1006733, 2019	88	2019
A metabolic core model elucidates how enhanced utilization of glucose and glutamine, with enhanced glutamine-dependent lactate production, promotes cancer cell growth: The … C Damiani, R Colombo, D Gaglio, F Mastroianni, D Pescini, ... PLoS computational biology 13 (9), e1005758, 2017	85	2017
Dynamical properties of a Boolean model of gene regulatory network with memory A Graudenzi, R Serra, M Villani, C Damiani, A Colacci, SA Kauffman Journal of Computational Biology 18 (10), 1291-1303, 2011	71	2011
Computational strategies for a system-level understanding of metabolism P Cazzaniga, C Damiani, D Besozzi, R Colombo, MS Nobile, D Gaglio, ... Metabolites 4 (4), 1034-1087, 2014	62	2014
Systems metabolomics: From metabolomic snapshots to design principles C Damiani, D Gaglio, E Sacco, L Alberghina, M Vanoni Current opinion in biotechnology 63, 190-199, 2020	51	2020
Zooming-in on cancer metabolic rewiring with tissue specific constraint-based models M Di Filippo, R Colombo, C Damiani, D Pescini, D Gaglio, M Vanoni, ... Computational biology and chemistry 62, 60-69, 2016	39	2016
Cell–cell interaction and diversity of emergent behaviours C Damiani, R Serra, M Villani, SA Kauffman, A Colacci IET systems biology 5 (2), 137-144, 2011	38	2011
Dynamical criticality in gene regulatory networks M Villani, L La Rocca, SA Kauffman, R Serra Complexity 2018 (1), 5980636, 2018	36	2018
Tumor heterogeneity: preclinical models, emerging technologies, and future applications M Proietto, M Crippa, C Damiani, V Pasquale, E Sacco, M Vanoni, ... Frontiers in Oncology 13, 1164535, 2023	32	2023
popFBA: tackling intratumour heterogeneity with Flux Balance Analysis C Damiani, M Di Filippo, D Pescini, D Maspero, R Colombo, G Mauri Bioinformatics 33 (14), i311-i318, 2017	31	2017
INTEGRATE: Model-based multi-omics data integration to characterize multi-level metabolic regulation M Di Filippo, D Pescini, BG Galuzzi, M Bonanomi, D Gaglio, E Mangano, ... PLoS computational biology 18 (2), e1009337, 2022	30	2022
The diffusion of perturbations in a model of coupled random boolean networks R Serra, M Villani, C Damiani, A Graudenzi, A Colacci Lecture Notes in Computer Science, 315-322, 2008	30	2008
Growth and division in a dynamic protocell model M Villani, A Filisetti, A Graudenzi, C Damiani, T Carletti, R Serra Life 4 (4), 837-864, 2014	29	2014
Integration of transcriptomic data and metabolic networks in cancer samples reveals highly significant prognostic power A Graudenzi, D Maspero, M Di Filippo, M Gnugnoli, C Isella, G Mauri, ... Journal of biomedical informatics, 2018	28	2018
Single-cell digital twins for cancer preclinical investigation MD Filippo, C Damiani, M Vanoni, D Maspero, G Mauri, L Alberghina, ... Metabolic Flux Analysis in Eukaryotic Cells: Methods and Protocols, 331-343, 2020	24	2020
Information transfer among coupled random boolean networks C Damiani, SA Kauffman, R Serra, M Villani, A Colacci Cellular Automata: 9th International Conference on Cellular Automata for …, 2010	23	2010
CABeRNET: a Cytoscape app for augmented Boolean models of gene regulatory NETworks A Paroni, A Graudenzi, G Caravagna, C Damiani, G Mauri, M Antoniotti BMC bioinformatics 17, 1-12, 2016	22	2016
GPRuler: Metabolic gene-protein-reaction rules automatic reconstruction M Di Filippo, C Damiani, D Pescini PLoS computational biology 17 (11), e1009550, 2021	21	2021
An ensemble evolutionary constraint-based approach to understand the emergence of metabolic phenotypes C Damiani, D Pescini, R Colombo, S Molinari, L Alberghina, M Vanoni, ... Natural Computing 13 (3), 321-331, 2014	21	2014
Interacting random boolean networks R Serra, M Villani, C Damiani, A Graudenzi, A Colacci, SA Kauffman Proceedings of ECCS07: European Conference on Complex Systems, 1-15, 2007	21	2007

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