Saliya Ekanayake, Ph.D.
Saliya Ekanayake, Ph.D.
Senior Software Engineer, Microsoft
Verified email at microsoft.com - Homepage
Title
Cited by
Cited by
Year
Hybrid cloud and cluster computing paradigms for life science applications
J Qiu, J Ekanayake, T Gunarathne, JY Choi, SH Bae, H Li, B Zhang, ...
BMC bioinformatics 11 (12), 1-6, 2010
962010
Big data, simulations and HPC convergence
G Fox, J Qiu, S Jha, S Ekanayake, S Kamburugamuve
Big Data Benchmarking, 3-17, 2015
712015
Anatomy of machine learning algorithm implementations in MPI, Spark, and Flink
S Kamburugamuve, P Wickramasinghe, S Ekanayake, GC Fox
The International Journal of High Performance Computing Applications 32 (1 …, 2018
292018
Towards high performance processing of streaming data in large data centers
S Kamburugamuve, S Ekanayake, M Pathirage, G Fox
2016 IEEE International Parallel and Distributed Processing Symposium …, 2016
292016
DACIDR: deterministic annealed clustering with interpolative dimension reduction using a large collection of 16S rRNA sequences
Y Ruan, S Ekanayake, M Rho, H Tang, SH Bae, J Qiu, G Fox
Proceedings of the ACM Conference on Bioinformatics, Computational Biology …, 2012
282012
Spidal java: High performance data analytics with java and mpi on large multicore hpc clusters
S Ekanayake, S Kamburugamuve, GC Fox
Proceedings of the 24th High Performance Computing Symposium, 1-8, 2016
242016
Data intensive computing for bioinformatics
J Qiu, J Ekanayake, T Gunarathne, JY Choi, SH Bae, Y Ruan, ...
Data Intensive Distributed Computing: Challenges and Solutions for Large …, 2012
242012
Integration of clustering and multidimensional scaling to determine phylogenetic trees as spherical phylograms visualized in 3 dimensions
Y Ruan, GL House, S Ekanayake, U Schütte, JD Bever, H Tang, G Fox
2014 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid …, 2014
222014
Phylogenetically structured differences in rRNA gene sequence variation among species of arbuscular mycorrhizal fungi and their implications for sequence clustering
GL House, S Ekanayake, Y Ruan, UME Schütte, W Kaonongbua, G Fox, ...
Applied and environmental microbiology 82 (16), 4921-4930, 2016
212016
Performance of windows multicore systems on threading and mpi
J Qiu, S Beason, SH Bae, S Ekanayake, G Fox
2010 10th IEEE/ACM International Conference on Cluster, Cloud and Grid …, 2010
212010
Acknowledgments
J Caesar
The War for Gaul, 271-274, 2019
182019
Visualizing the protein sequence universe
L Stanberry, R Higdon, W Haynes, N Kolker, W Broomall, S Ekanayake, ...
Proceedings of the 3rd international workshop on Emerging computational …, 2012
152012
Generative modeling of human behavior and social interactions using abductive analysis
Y Ren, V Cedeno-Mieles, Z Hu, X Deng, A Adiga, C Barrett, S Ekanayake, ...
2018 IEEE/ACM International Conference on Advances in Social Networks …, 2018
132018
Java thread and process performance for parallel machine learning on multicore hpc clusters
S Ekanayake, S Kamburugamuve, P Wickramasinghe, GC Fox
2016 IEEE international conference on big data (Big Data), 347-354, 2016
122016
Interpolative multidimensional scaling techniques for the identification of clusters in very large sequence sets
A Hughes, Y Ruan, S Ekanayake, SH Bae, Q Dong, M Rho, J Qiu, G Fox
BMC bioinformatics 13 (2), 1-6, 2012
102012
Midas: Multilinear detection at scale
S Ekanayake, J Cadena, U Wickramasinghe, A Vullikanti
Journal of Parallel and Distributed Computing 132, 363-382, 2019
82019
The parallelism motifs of genomic data analysis
K Yelick, A Buluç, M Awan, A Azad, B Brock, R Egan, S Ekanayake, ...
Philosophical Transactions of the Royal Society A 378 (2166), 20190394, 2020
72020
White paper: Big data, simulations and hpc convergence
G Fox, J Qiu, S Jha, S Ekanayake, S Kamburugamuve
BDEC Frankfurt workshop. June 16, 2016
72016
TSmap3D: Browser visualization of high dimensional time series data
S Kamburugamuve, P Wickramasinghe, S Ekanayake, C Wimalasena, ...
2016 IEEE International Conference on Big Data (Big Data), 3583-3592, 2016
62016
Distributed many-to-many protein sequence alignment using sparse matrices
O Selvitopi, S Ekanayake, G Guidi, G Pavlopoulos, A Azad, A Buluc
arXiv preprint arXiv:2009.14467, 2020
42020
The system can't perform the operation now. Try again later.
Articles 1–20