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Xinghua (Mindy) Shi
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Cited by
Year
A global reference for human genetic variation
1000 Genomes Project Consortium
Nature 526 (7571), 68, 2015
150432015
A map of human genome variation from population scale sequencing
1000 Genomes Project Consortium
Nature 467 (7319), 1061, 2010
87762010
An integrated map of genetic variation from 1,092 human genomes.
GR Abecasis, A Auton, LD Brooks, MA DePristo, RM Durbin, ...
Nature 491 (7422), 56, 2012
8301*2012
An integrated map of structural variation in 2,504 human genomes
PH Sudmant, T Rausch, EJ Gardner, RE Handsaker, A Abyzov, ...
Nature 526 (7571), 75-81, 2015
23992015
Mapping copy number variation by population-scale genome sequencing
RE Mills, K Walter, C Stewart, RE Handsaker, K Chen, C Alkan, A Abyzov, ...
Nature 470 (7332), 59-65, 2011
12882011
Multi-platform discovery of haplotype-resolved structural variation in human genomes
MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ...
Nature communications 10 (1), 1784, 2019
7682019
Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants
D Pinto, K Darvishi, X Shi, D Rajan, D Rigler, T Fitzgerald, AC Lionel, ...
Nature biotechnology 29 (6), 512-520, 2011
4822011
Haplotype-resolved diverse human genomes and integrated analysis of structural variation
P Ebert, PA Audano, Q Zhu, B Rodriguez-Martin, D Porubsky, MJ Bonder, ...
Science 372 (6537), eabf7117, 2021
4692021
Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel
O Delaneau, J Marchini
Nature communications 5 (1), 3934, 2014
4452014
Integrative annotation of variants from 1092 humans: application to cancer genomics
E Khurana, Y Fu, V Colonna, XJ Mu, HM Kang, T Lappalainen, A Sboner, ...
Science 342 (6154), 1235587, 2013
4202013
A survey of social-based routing in delay tolerant networks: Positive and negative social effects
Y Zhu, B Xu, X Shi, Y Wang
IEEE Communications Surveys & Tutorials 15 (1), 387-401, 2012
4162012
A deep auto-encoder model for gene expression prediction
R Xie, J Wen, A Quitadamo, J Cheng, X Shi
BMC genomics 18, 39-49, 2017
1282017
The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation
LK McNeil, C Reich, RK Aziz, D Bartels, M Cohoon, T Disz, RA Edwards, ...
Nucleic acids research 35 (suppl_1), D347-D353, 2007
1212007
Extensive genetic diversity and substructuring among zebrafish strains revealed through copy number variant analysis
KH Brown, KP Dobrinski, AS Lee, O Gokcumen, RE Mills, X Shi, ...
Proceedings of the National Academy of Sciences 109 (2), 529-534, 2012
1142012
Effects of short indels on protein structure and function in human genomes
M Lin, S Whitmire, J Chen, A Farrel, X Shi, J Guo
Scientific reports 7 (1), 9313, 2017
1092017
DeepDSC: a deep learning method to predict drug sensitivity of cancer cell lines
M Li, Y Wang, R Zheng, X Shi, Y Li, FX Wu, J Wang
IEEE/ACM transactions on computational biology and bioinformatics 18 (2 …, 2019
1052019
Human-specific tandem repeat expansion and differential gene expression during primate evolution
A Sulovari, R Li, PA Audano, D Porubsky, MR Vollger, GA Logsdon, ...
Proceedings of the National Academy of Sciences 116 (46), 23243-23253, 2019
982019
Accurate recognition of colorectal cancer with semi-supervised deep learning on pathological images
G Yu, K Sun, C Xu, XH Shi, C Wu, T Xie, RQ Meng, XH Meng, KS Wang, ...
Nature communications 12 (1), 6311, 2021
932021
An overview of human genetic privacy
X Shi, X Wu
Annals of the New York Academy of Sciences 1387 (1), 61-72, 2017
842017
Refinement of primate copy number variationhotspots identifies candidate genomic regions evolving under positive selection
O Gokcumen, PL Babb, RC Iskow, Q Zhu, X Shi, RE Mills, I Ionita-Laza, ...
Genome Biology 12, 1-11, 2011
722011
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