Xinghua (Mindy) Shi
Cited by
Cited by
A global reference for human genetic variation
1000 Genomes Project Consortium
Nature 526 (7571), 68, 2015
A map of human genome variation from population scale sequencing
1000 Genomes Project Consortium
Nature 467 (7319), 1061, 2010
An integrated map of genetic variation from 1,092 human genomes.
GR Abecasis, A Auton, LD Brooks, MA DePristo, RM Durbin, ...
Nature 491 (7422), 56, 2012
An integrated map of structural variation in 2,504 human genomes
PH Sudmant, T Rausch, EJ Gardner, RE Handsaker, A Abyzov, ...
Nature 526 (7571), 75-81, 2015
Mapping copy number variation by population-scale genome sequencing
RE Mills, K Walter, C Stewart, RE Handsaker, K Chen, C Alkan, A Abyzov, ...
Nature 470 (7332), 59-65, 2011
Multi-platform discovery of haplotype-resolved structural variation in human genomes
MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ...
Nature communications 10 (1), 1784, 2019
Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants
D Pinto, K Darvishi, X Shi, D Rajan, D Rigler, T Fitzgerald, AC Lionel, ...
Nature biotechnology 29 (6), 512-520, 2011
Haplotype-resolved diverse human genomes and integrated analysis of structural variation
P Ebert, PA Audano, Q Zhu, B Rodriguez-Martin, D Porubsky, MJ Bonder, ...
Science 372 (6537), eabf7117, 2021
Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel
O Delaneau, J Marchini
Nature communications 5 (1), 3934, 2014
Integrative annotation of variants from 1092 humans: application to cancer genomics
E Khurana, Y Fu, V Colonna, XJ Mu, HM Kang, T Lappalainen, A Sboner, ...
Science 342 (6154), 1235587, 2013
A survey of social-based routing in delay tolerant networks: Positive and negative social effects
Y Zhu, B Xu, X Shi, Y Wang
IEEE Communications Surveys & Tutorials 15 (1), 387-401, 2012
A deep auto-encoder model for gene expression prediction
R Xie, J Wen, A Quitadamo, J Cheng, X Shi
BMC genomics 18, 39-49, 2017
The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation
LK McNeil, C Reich, RK Aziz, D Bartels, M Cohoon, T Disz, RA Edwards, ...
Nucleic acids research 35 (suppl_1), D347-D353, 2007
Extensive genetic diversity and substructuring among zebrafish strains revealed through copy number variant analysis
KH Brown, KP Dobrinski, AS Lee, O Gokcumen, RE Mills, X Shi, ...
Proceedings of the National Academy of Sciences 109 (2), 529-534, 2012
Effects of short indels on protein structure and function in human genomes
M Lin, S Whitmire, J Chen, A Farrel, X Shi, J Guo
Scientific reports 7 (1), 9313, 2017
DeepDSC: a deep learning method to predict drug sensitivity of cancer cell lines
M Li, Y Wang, R Zheng, X Shi, Y Li, FX Wu, J Wang
IEEE/ACM transactions on computational biology and bioinformatics 18 (2 …, 2019
Human-specific tandem repeat expansion and differential gene expression during primate evolution
A Sulovari, R Li, PA Audano, D Porubsky, MR Vollger, GA Logsdon, ...
Proceedings of the National Academy of Sciences 116 (46), 23243-23253, 2019
Accurate recognition of colorectal cancer with semi-supervised deep learning on pathological images
G Yu, K Sun, C Xu, XH Shi, C Wu, T Xie, RQ Meng, XH Meng, KS Wang, ...
Nature communications 12 (1), 6311, 2021
An overview of human genetic privacy
X Shi, X Wu
Annals of the New York Academy of Sciences 1387 (1), 61-72, 2017
Refinement of primate copy number variationhotspots identifies candidate genomic regions evolving under positive selection
O Gokcumen, PL Babb, RC Iskow, Q Zhu, X Shi, RE Mills, I Ionita-Laza, ...
Genome Biology 12, 1-11, 2011
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