Theoretical foundation of the RelTime method for estimating divergence times from variable evolutionary rates K Tamura, Q Tao, S Kumar Molecular biology and evolution 35 (7), 1770-1782, 2018 | 171 | 2018 |
An evolutionary portrait of the progenitor SARS-CoV-2 and its dominant offshoots in COVID-19 pandemic S Kumar, Q Tao, S Weaver, M Sanderford, MA Caraballo-Ortiz, S Sharma, ... Molecular Biology and Evolution 38 (8), 3046-3059, 2021 | 76 | 2021 |
Fast and accurate estimates of divergence times from big data B Mello, Q Tao, K Tamura, S Kumar Molecular biology and evolution 34 (1), 45-50, 2017 | 56 | 2017 |
A Machine Learning Method for Detecting Autocorrelation of Evolutionary Rates in Large Phylogenies Q Tao, K Tamura, F U. Battistuzzi, S Kumar Molecular biology and evolution 36 (4), 811-824, 2019 | 50 | 2019 |
Reliable confidence intervals for RelTime estimates of evolutionary divergence times Q Tao, K Tamura, S Kumar Molecular Biology and Evolution 37 (1), 280-290, 2020 | 38 | 2020 |
Accurate timetrees require accurate calibrations SB Hedges, Q Tao, M Walker, S Kumar Proceedings of the National Academy of Sciences 115 (41), E9510-E9511, 2018 | 29 | 2018 |
RelTime relaxes the strict molecular clock throughout the phylogeny FU Battistuzzi, Q Tao, L Jones, K Tamura, S Kumar Genome Biology and Evolution 10 (6), 1631-1636, 2018 | 28 | 2018 |
A new method for inferring timetrees from temporally sampled molecular sequences S Miura, K Tamura, Q Tao, LA Huuki, SL Kosakovsky Pond, J Priest, ... PLOS Computational Biology 16 (1), e1007046, 2020 | 23 | 2020 |
Molecular dating for phylogenies containing a mix of populations and species by using Bayesian and RelTime approaches B Mello, Q Tao, J Barba‐Montoya, S Kumar Molecular ecology resources 21 (1), 122-136, 2021 | 22 | 2021 |
Efficient methods for dating evolutionary divergences Q Tao, K Tamura, S Kumar The Molecular Evolutionary Clock: Theory and Practice, 197-219, 2020 | 19 | 2020 |
Relative efficiencies of simple and complex substitution models in estimating divergence times in phylogenomics Q Tao, J Barba-Montoya, LA Huuki, MK Durnan, S Kumar Molecular Biology and Evolution 37 (6), 1819-1831, 2020 | 16 | 2020 |
Expressional Analysis of Immunoglobulin D in Cattle (Bos taurus), a Large Domesticated Ungulate B Xu, J Wang, M Zhang, P Wang, Z Wei, Y Sun, Q Tao, L Ren, X Hu, ... Public Library of Science 7 (9), e44719, 2012 | 14 | 2012 |
TopHap: rapid inference of key phylogenetic structures from common haplotypes in large genome collections with limited diversity MA Caraballo-Ortiz, S Miura, M Sanderford, T Dolker, Q Tao, S Weaver, ... Bioinformatics 38 (10), 2719-2726, 2022 | 9 | 2022 |
Data-driven speciation tree prior for better species divergence times in calibration-poor molecular phylogenies Q Tao, J Barba-Montoya, S Kumar Bioinformatics 37 (Supplement_1), i102-i110, 2021 | 9 | 2021 |
Molecular and morphological clocks for estimating evolutionary divergence times J Barba-Montoya, Q Tao, S Kumar BMC Ecology and Evolution 21 (1), 83, 2021 | 8 | 2021 |
Assessing rapid relaxed-clock methods for phylogenomic dating J Barba-Montoya, Q Tao, S Kumar Genome Biology and Evolution 13 (11), evab251, 2021 | 7 | 2021 |
Using a GTR+ Γ substitution model for dating sequence divergence when stationarity and time-reversibility assumptions are violated J Barba-Montoya, Q Tao, S Kumar Bioinformatics 36 (Supplement_2), i884-i894, 2020 | 7 | 2020 |
Kosakovsky Pond SL, Priest J., Deng J., Kumar S. 2020. A new method for inferring timetrees from temporally sampled molecular sequences S Miura, K Tamura, Q Tao, LA Huuki PLoS Comput. Biol 16, e1007046, 0 | 4 | |
Computational reproducibility of molecular phylogenies S Kumar, Q Tao, AP Lamarca, K Tamura Molecular Biology and Evolution 40 (7), msad165, 2023 | | 2023 |
Molecular Dating: Theoretical and Practical Investigations in Phylogenomics Q Tao Temple University, 2019 | | 2019 |