Parmbsc1: a refined force field for DNA simulations I Ivani, PD Dans, A Noy, A Pérez, I Faustino, A Hospital, J Walther, ... Nature methods 13 (1), 55-58, 2016 | 865 | 2016 |
Colibactin DNA-damage signature indicates mutational impact in colorectal cancer PJ Dziubańska-Kusibab, H Berger, F Battistini, BAM Bouwman, A Iftekhar, ... Nature medicine 26 (7), 1063-1069, 2020 | 181 | 2020 |
Impact of methylation on the physical properties of DNA A Pérez, CL Castellazzi, F Battistini, K Collinet, O Flores, O Deniz, ... Biophysical journal 102 (9), 2140-2148, 2012 | 135 | 2012 |
Long-timescale dynamics of the Drew–Dickerson dodecamer PD Dans, L Danilāne, I Ivani, T Dršata, F Lankaš, A Hospital, J Walther, ... Nucleic Acids Research 44 (9), 4052-4066, 2016 | 122 | 2016 |
Unraveling the sequence-dependent polymorphic behavior of d (CpG) steps in B-DNA PD Dans, I Faustino, F Battistini, K Zakrzewska, R Lavery, M Orozco Nucleic acids research 42 (18), 11304-11320, 2014 | 87 | 2014 |
Understanding the connection between epigenetic DNA methylation and nucleosome positioning from computer simulations G Portella, F Battistini, M Orozco PLoS computational biology 9 (11), e1003354, 2013 | 61 | 2013 |
BIGNASim: a NoSQL database structure and analysis portal for nucleic acids simulation data A Hospital, P Andrio, C Cugnasco, L Codo, Y Becerra, PD Dans, ... Nucleic acids research 44 (D1), D272-D278, 2016 | 50 | 2016 |
Repair of UV-induced DNA damage independent of nucleotide excision repair is masked by MUTYH A Mazouzi, F Battistini, SC Moser, JF da Silva, M Wiedner, M Owusu, ... Molecular cell 68 (4), 797-807. e7, 2017 | 46 | 2017 |
Physical properties of naked DNA influence nucleosome positioning and correlate with transcription start and termination sites in yeast Ö Deniz, O Flores, F Battistini, A Pérez, M Soler-López, M Orozco BMC genomics 12, 1-11, 2011 | 41 | 2011 |
Structural mechanics of DNA wrapping in the nucleosome F Battistini, CA Hunter, EJ Gardiner, MJ Packer Journal of molecular biology 396 (2), 264-279, 2010 | 40 | 2010 |
How B-DNA dynamics decipher sequence-selective protein recognition F Battistini, A Hospital, D Buitrago, D Gallego, PD Dans, JL Gelpí, ... Journal of molecular biology 431 (19), 3845-3859, 2019 | 26 | 2019 |
DNA structure directs positioning of the mitochondrial genome packaging protein Abf2p A Chakraborty, S Lyonnais, F Battistini, A Hospital, G Medici, R Prohens, ... Nucleic Acids Research 45 (2), 951-967, 2017 | 23 | 2017 |
Structure-based identification of new high-affinity nucleosome binding sequences F Battistini, CA Hunter, IK Moore, J Widom Journal of molecular biology 420 (1-2), 8-16, 2012 | 23 | 2012 |
DNA specificities modulate the binding of human transcription factor A to mitochondrial DNA control region A Cuppari, P Fernández-Millán, F Battistini, A Tarrés-Solé, S Lyonnais, ... Nucleic acids research 47 (12), 6519-6537, 2019 | 20 | 2019 |
Protein flexibility and synergy of HMG domains underlie U-turn bending of DNA by TFAM in solution A Rubio-Cosials, F Battistini, A Gansen, A Cuppari, P Bernadó, M Orozco, ... Biophysical journal 114 (10), 2386-2396, 2018 | 19 | 2018 |
Surviving the deluge of biosimulation data A Hospital, F Battistini, R Soliva, JL Gelpí, M Orozco Wiley Interdisciplinary Reviews: Computational Molecular Science 10 (3), e1449, 2020 | 18 | 2020 |
Sequence-dependent structural properties of B-DNA: what have we learned in 40 years? G Da Rosa, L Grille, V Calzada, K Ahmad, JP Arcon, F Battistini, G Bayarri, ... Biophysical Reviews, 1-11, 2021 | 17 | 2021 |
Nucleosome Dynamics: a new tool for the dynamic analysis of nucleosome positioning D Buitrago, L Codo, R Illa, P de Jorge, F Battistini, O Flores, G Bayarri, ... Nucleic Acids Research 47 (18), 9511-9523, 2019 | 15 | 2019 |
DNAffinity: a machine-learning approach to predict DNA binding affinities of transcription factors S Barissi, A Sala, M Wieczór, F Battistini, M Orozco Nucleic Acids Research 50 (16), 9105-9114, 2022 | 12 | 2022 |
Multiscale modeling of thiol overoxidation in peroxiredoxins by hydrogen peroxide JA Semelak, F Battistini, R Radi, M Trujillo, A Zeida, DA Estrin Journal of Chemical Information and Modeling 60 (2), 843-853, 2019 | 10 | 2019 |