The chromatin accessibility landscape of primary human cancers MR Corces, JM Granja, S Shams, BH Louie, JA Seoane, W Zhou, ... Science 362 (6413), eaav1898, 2018 | 941 | 2018 |
A consensus molecular classification of muscle-invasive bladder cancer A Kamoun, A de Reyniès, Y Allory, G Sjödahl, AG Robertson, R Seiler, ... European urology 77 (4), 420-433, 2020 | 937 | 2020 |
An integrated multi-omics analysis identifies prognostic molecular subtypes of non-muscle-invasive bladder cancer SV Lindskrog, F Prip, P Lamy, A Taber, CS Groeneveld, ... Nature communications 12 (1), 2301, 2021 | 183 | 2021 |
Tertiary lymphoid structures marker CXCL13 is associated with better survival for patients with advanced-stage bladder cancer treated with immunotherapy CS Groeneveld, J Fontugne, L Cabel, I Bernard-Pierrot, F Radvanyi, ... European Journal of Cancer 148, 181-189, 2021 | 86 | 2021 |
Identification of differential tumor subtypes of T1 bladder cancer AG Robertson, CS Groeneveld, B Jordan, X Lin, KA McLaughlin, A Das, ... European urology 78 (4), 533-537, 2020 | 86 | 2020 |
Long non-coding RNAs identify a subset of luminal muscle-invasive bladder cancer patients with favorable prognosis JJ De Jong, Y Liu, AG Robertson, R Seiler, CS Groeneveld, ... Genome medicine 11, 1-13, 2019 | 44 | 2019 |
Cancer Genome Atlas Analysis Network, Greenleaf WJ, Chang HY MR Corces, JM Granja, S Shams, BH Louie, JA Seoane, W Zhou, ... The chromatin accessibility landscape of primary human cancers. Science 362, 2018 | 28 | 2018 |
RTNsurvival: an R/Bioconductor package for regulatory network survival analysis CS Groeneveld, VS Chagas, SJM Jones, AG Robertson, BAJ Ponder, ... Bioinformatics 35 (21), 4488-4489, 2019 | 26 | 2019 |
Expression-based subtypes define pathologic response to neoadjuvant immune-checkpoint inhibitors in muscle-invasive bladder cancer AG Robertson, K Meghani, LF Cooley, KA McLaughlin, LA Fall, Y Yu, ... Nature communications 14 (1), 2126, 2023 | 17 | 2023 |
RTNduals: an R/Bioconductor package for analysis of co-regulation and inference of dual regulons VS Chagas, CS Groeneveld, KG Oliveira, S Trefflich, RC de Almeida, ... Bioinformatics 35 (24), 5357-5358, 2019 | 12 | 2019 |
FGFR3 mutational activation can induce luminal-like papillary bladder tumor formation and favors a male sex bias MJ Shi, J Fontugne, A Moreno-Vega, XY Meng, C Groeneveld, F Dufour, ... European Urology 83 (1), 70-81, 2023 | 10 | 2023 |
Bladder Cancer Molecular Taxonomy Group A Kamoun, A de Reyniès, Y Allory, G Sjödahl, AG Robertson, R Seiler, ... The consensus molecular classification of muscle-invasive bladder cancer …, 2020 | 10 | 2020 |
TreeAndLeaf: an R/Bioconductor package for graphs and trees with focus on the leaves MA Cardoso, LEA Rizzardi, LW Kume, CS Groeneveld, S Trefflich, ... Bioinformatics 38 (5), 1463-1464, 2022 | 8 | 2022 |
Modeling progression of single cell populations through the cell cycle as a sequence of switches A Zinovyev, M Sadovsky, L Calzone, A Fouché, CS Groeneveld, ... Frontiers in Molecular Biosciences 8, 793912, 2022 | 8 | 2022 |
An integrated multi-omics analysis identifies clinically relevant molecular subtypes of non-muscle-invasive bladder cancer SV Lindskrog, FF Prip, P Lamy, A Taber, CS Groeneveld, ... medRxiv, 2020.06. 19.20054809, 2020 | 8 | 2020 |
A transcriptional network of cell cycle dysregulation in noninvasive papillary urothelial carcinoma JI Warrick, MA Knowles, CD Hurst, L Shuman, JD Raman, V Walter, J Putt, ... Scientific reports 12 (1), 16538, 2022 | 7 | 2022 |
Integrated molecular and pharmacological characterization of patient-derived xenografts from bladder and ureteral cancers identifies new potential therapies H Lang, C Béraud, L Cabel, J Fontugne, M Lassalle, C Krucker, F Dufour, ... Frontiers in Oncology 12, 930731, 2022 | 5 | 2022 |
Epigenomic mapping identifies an enhancer repertoire that regulates cell identity in bladder cancer through distinct transcription factor networks H Neyret-Kahn, J Fontugne, XY Meng, CS Groeneveld, L Cabel, T Ye, ... Oncogene 42 (19), 1524-1542, 2023 | 4 | 2023 |
Novel lncRNAs co-expression networks identifies LINC00504 with oncogenic role in luminal A breast cancer cells C Mathias, CS Groeneveld, S Trefflich, EP Zambalde, RS Lima, CA Urban, ... International Journal of Molecular Sciences 22 (5), 2420, 2021 | 4 | 2021 |
Proteogenomic characterization of bladder cancer reveals sensitivity to apoptosis induced by tumor necrosis factor–related apoptosis-inducing ligand in FGFR3-mutated tumors CS Groeneveld, V Sanchez-Quiles, F Dufour, M Shi, F Dingli, R Nicolle, ... European urology 85 (5), 483-494, 2024 | 3 | 2024 |