| COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ... Molecular systems biology 17 (10), e10387, 2021 | 93 | 2021 |
| Identification of a master transcription factor and a regulatory mechanism for desiccation tolerance in the anhydrobiotic cell line Pv11 TG Yamada, Y Hiki, NF Hiroi, E Shagimardanova, O Gusev, R Cornette, ... PLoS One 15 (3), e0230218, 2020 | 12 | 2020 |
| Cas9-mediated genome editing reveals a significant contribution of calcium signaling pathways to anhydrobiosis in Pv11 cells Y Miyata, H Fuse, S Tokumoto, Y Hiki, R Deviatiiarov, Y Yoshida, ... Scientific reports 11 (1), 19698, 2021 | 8 | 2021 |
| Genome-wide role of HSF1 in transcriptional regulation of desiccation tolerance in the anhydrobiotic cell line, Pv11 S Tokumoto, Y Miyata, R Deviatiiarov, TG Yamada, Y Hiki, O Kozlova, ... International journal of molecular sciences 22 (11), 5798, 2021 | 8 | 2021 |
| Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches A Niarakis, M Ostaszewski, A Mazein, I Kuperstein, M Kutmon, ... Frontiers in Immunology 14, 1282859, 2024 | 5 | 2024 |
| Asynchronous Batch Bayesian Optimization with Pipelining Evaluations for Experimental Resource $\unicode {x2013} $ constrained Conditions Y Taguchi, Y Shibuya, Y Hiki, T Morikura, TG Yamada, A Funahashi arXiv preprint arXiv:2412.04392, 2024 | | 2024 |
| A deep position-encoding model for predicting olfactory perception from molecular structures and electrostatics M Zhang, Y Hiki, A Funahashi, TJ Kobayashi npj Systems Biology and Applications 10 (1), 76, 2024 | | 2024 |
| Inference of gene regulatory networks for overcoming low performance in real-world data Y Hiki, Y Tokuoka, TG Yamada, A Funahashi bioRxiv, 2024.07. 16.603684, 2024 | | 2024 |
| Mol-PECO: a deep learning model to predict human olfactory perception from molecular structures M Zhang, Y Hiki, A Funahashi, TJ Kobayashi arXiv preprint arXiv:2305.12424, 2023 | | 2023 |
| COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms I Kuperstein, C Auffray, RW Overall, L Matthews, D Börnigen, J Somers, ... (No Title), 2020 | | 2020 |
| Inference of transcriptional regulatory network driven by desiccation and rehydration Y Hiki, TG Yamada, O Kozlova, R Cornette, O Gusev, T Kikawada | | |
