Hervé Marie-Nelly
FISH-quant: automatic counting of transcripts in 3D FISH images
F Mueller, A Senecal, K Tantale, H Marie-Nelly, N Ly, O Collin, E Basyuk, ...
Nature methods 10 (4), 277-278, 2013
Normalization of a chromosomal contact map
A Cournac, H Marie-Nelly, M Marbouty, R Koszul, J Mozziconacci
BMC genomics 13 (1), 436, 2012
A predictive computational model of the dynamic 3D interphase yeast nucleus
H Wong, H Marie-Nelly, S Herbert, P Carrivain, H Blanc, R Koszul, ...
Current Biology 22 (20), 1881-1890, 2012
RNA polymerase II clustering through carboxy-terminal domain phase separation
M Boehning, C Dugast-Darzacq, M Rankovic, AS Hansen, T Yu, ...
Nature structural & molecular biology 25 (9), 833-840, 2018
RNA polymerase II clustering through CTD phase separation
M Boehning, C Dugast-Darzacq, M Rankovic, AS Hansen, TK Yu, ...
bioRxiv, 316372, 2018
Metagenomic chromosome conformation capture (meta3C) unveils the diversity of chromosome organization in microorganisms
M Marbouty, A Cournac, JF Flot, H Marie-Nelly, J Mozziconacci, R Koszul
Elife 3, e03318, 2014
High-quality genome (re) assembly using chromosomal contact data
H Marie-Nelly, M Marbouty, A Cournac, JF Flot, G Liti, DP Parodi, S Syan, ...
Nature Communications 5, 2014
Contact genomics: scaffolding and phasing (meta) genomes using chromosome 3D physical signatures
JF Flot, H Marie-Nelly, R Koszul
FEBS letters 589 (20PartA), 2966-2974, 2015
Evidence for DNA-mediated nuclear compartmentalization distinct from phase separation
DT McSwiggen, AS Hansen, SS Teves, H Marie-Nelly, Y Hao, AB Heckert, ...
Elife 8, e47098, 2019
Filling annotation gaps in yeast genomes using genome-wide contact maps
H Marie-Nelly, M Marbouty, A Cournac, G Liti, G Fischer, C Zimmer, ...
Bioinformatics 30 (15), 2105-2113, 2014
A dynamic interplay of enhancer elements regulates Klf4 expression in naïve pluripotency
L Xie, SE Torigoe, J Xiao, DH Mai, L Li, FP Davis, P Dong, H Marie-Nelly, ...
Genes & development 31 (17), 1795-1808, 2017
Transient DNA binding induces RNA polymerase II compartmentalization during herpesviral infection distinct from phase separation
DT McSwiggen, AS Hansen, H Marie-Nelly, S Teves, A Heckert, ...
BioRxiv, 375071, 2018
Chromosome-level quality scaffolding of brown algal genomes using InstaGRAAL, a proximity ligation-based scaffolder
L Baudry, M Marbouty, H Marie-Nelly, A Cormier, N Guiglielmoni, K Avia, ...
bioRxiv, 2019
A probabilistic approach for genome assembly from high-throughput chromosome conformation capture data
H Marie-Nelly
Université Pierre et Marie Curie-Paris 6, 2013
A Bayesian nonparametric approach to super-resolution single-molecule localization
MI Gabitto, H Marie-Nelly, A Pakman, A Pataki, X Darzacq, M Jordan
bioRxiv, 2020
Method, device, and computer program for assembling pieces of chromosomes from one or several organisms
R Koszul, M Marbouty, HD Marie-nelly, A Cournac
US Patent App. 15/321,066, 2017
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