Single-cell full-length total RNA sequencing uncovers dynamics of recursive splicing and enhancer RNAs T Hayashi, H Ozaki, Y Sasagawa, M Umeda, H Danno, I Nikaido Nature communications 9 (1), 1-16, 2018 | 111 | 2018 |
CLOCK-controlled polyphonic regulation of circadian rhythms through canonical and noncanonical E-boxes H Yoshitane, H Ozaki, H Terajima, NH Du, Y Suzuki, T Fujimori, N Kosaka, ... Molecular and cellular biology 34 (10), 1776-1787, 2014 | 78 | 2014 |
CapR: revealing structural specificities of RNA-binding protein target recognition using CLIP-seq data T Fukunaga, H Ozaki, G Terai, K Asai, W Iwasaki, H Kiryu Genome biology 15 (1), R16, 2014 | 56 | 2014 |
ADARB1 catalyzes circadian A-to-I editing and regulates RNA rhythm H Terajima, H Yoshitane, H Ozaki, Y Suzuki, S Shimba, S Kuroda, ... Nature genetics 49 (1), 146-151, 2017 | 51 | 2017 |
Somatic primary piRNA biogenesis driven by cis-acting RNA elements and trans-acting Yb H Ishizu, YW Iwasaki, S Hirakata, H Ozaki, W Iwasaki, H Siomi, MC Siomi Cell reports 12 (3), 429-440, 2015 | 48 | 2015 |
Discovery of osmotic sensitive transcription factors in fish intestine via a transcriptomic approach MKS Wong, H Ozaki, Y Suzuki, W Iwasaki, Y Takei BMC genomics 15 (1), 1134, 2014 | 21 | 2014 |
Parallel selection on gene copy number variations through evolution of three-spined stickleback genomes S Hirase, H Ozaki, W Iwasaki BMC genomics 15 (1), 735, 2014 | 21 | 2014 |
Flexible selection of diversified Na+/K+-ATPase α-subunit isoforms for osmoregulation in teleosts MKS Wong, S Pipil, H Ozaki, Y Suzuki, W Iwasaki, Y Takei Zoological Letters 2 (1), 15, 2016 | 16 | 2016 |
Molecular mechanisms underlying active desalination and low water permeability in the esophagus of eels acclimated to seawater Y Takei, MKS Wong, S Pipil, H Ozaki, Y Suzuki, W Iwasaki, M Kusakabe American Journal of Physiology-Regulatory, Integrative and Comparative …, 2017 | 15 | 2017 |
Functional D-box sequences reset the circadian clock and drive mRNA rhythms H Yoshitane, Y Asano, A Sagami, S Sakai, Y Suzuki, H Okamura, ... Communications biology 2 (1), 1-10, 2019 | 12 | 2019 |
Stability of RNA sequences derived from the coronavirus genome in human cells H Wakida, K Kawata, Y Yamaji, E Hattori, T Tsuchiya, Y Wada, H Ozaki, ... Biochemical and Biophysical Research Communications, 2020 | 7 | 2020 |
Possible cross-feeding pathway of facultative methylotroph Methyloceanibacter caenitepidi Gela4 on methanotroph Methylocaldum marinum S8 M Takeuchi, H Ozaki, S Hiraoka, Y Kamagata, S Sakata, H Yoshioka, ... PloS one 14 (3), e0213535, 2019 | 6 | 2019 |
MOCCS: Clarifying DNA-binding motif ambiguity using ChIP-seq data H Ozaki, W Iwasaki Computational biology and chemistry 63, 62-72, 2016 | 4 | 2016 |
Millefy: visualizing cell-to-cell heterogeneity in read coverage of single-cell RNA sequencing datasets H Ozaki, T Hayashi, U Mana, I Nikaido BMC Genomics 21, 177, 2020 | 3 | 2020 |
An NMF-based approach to discover overlooked differentially expressed gene regions from single-cell RNA-seq data H Matsumoto, T Hayashi, H Ozaki, K Tsuyuzaki, M Umeda, T Iida, ... NAR Genomics and Bioinformatics 2 (1), lqz020, 2020 | 3 | 2020 |
A sodium binding system alleviates acute salt stress during seawater acclimation in eels MKS Wong, T Tsukada, N Ogawa, S Pipil, H Ozaki, Y Suzuki, W Iwasaki, ... Zoological letters 3 (1), 1-20, 2017 | 3 | 2017 |
Transomics analysis reveals allosteric and gene regulation axes for altered hepatic glucose-responsive metabolism in obesity T Kokaji, A Hatano, Y Ito, K Yugi, M Eto, K Morita, S Ohno, M Fujii, ... Science Signaling 13 (660), 2020 | | 2020 |
MotiMul: A significant discriminative sequence motif discovery algorithm with multiple testing correction K Mori, H Ozaki, T Fukunaga BioRxiv, 2020 | | 2020 |
Integrated analysis of glycan and RNA in single cells F Minoshima, H Ozaki, H Tateno bioRxiv, 2020 | | 2020 |
DDBJ Data Analysis Challenge: a machine learning competition to predict Arabidopsis chromatin feature annotations from DNA sequences E Kaminuma, Y Baba, M Mochizuki, H Matsumoto, H Ozaki, T Okayama, ... Genes & Genetic Systems, 19-00034, 2020 | | 2020 |