|Single-cell full-length total RNA sequencing uncovers dynamics of recursive splicing and enhancer RNAs|
T Hayashi, H Ozaki, Y Sasagawa, M Umeda, H Danno, I Nikaido
Nature communications 9 (1), 1-16, 2018
|CLOCK-controlled polyphonic regulation of circadian rhythms through canonical and noncanonical E-boxes|
H Yoshitane, H Ozaki, H Terajima, NH Du, Y Suzuki, T Fujimori, N Kosaka, ...
Molecular and cellular biology 34 (10), 1776-1787, 2014
|CapR: revealing structural specificities of RNA-binding protein target recognition using CLIP-seq data|
T Fukunaga, H Ozaki, G Terai, K Asai, W Iwasaki, H Kiryu
Genome biology 15 (1), R16, 2014
|ADARB1 catalyzes circadian A-to-I editing and regulates RNA rhythm|
H Terajima, H Yoshitane, H Ozaki, Y Suzuki, S Shimba, S Kuroda, ...
Nature genetics 49 (1), 146-151, 2017
|Somatic primary piRNA biogenesis driven by cis-acting RNA elements and trans-acting Yb|
H Ishizu, YW Iwasaki, S Hirakata, H Ozaki, W Iwasaki, H Siomi, MC Siomi
Cell reports 12 (3), 429-440, 2015
|Discovery of osmotic sensitive transcription factors in fish intestine via a transcriptomic approach|
MKS Wong, H Ozaki, Y Suzuki, W Iwasaki, Y Takei
BMC genomics 15 (1), 1134, 2014
|Parallel selection on gene copy number variations through evolution of three-spined stickleback genomes|
S Hirase, H Ozaki, W Iwasaki
BMC genomics 15 (1), 735, 2014
|Flexible selection of diversified Na+/K+-ATPase α-subunit isoforms for osmoregulation in teleosts|
MKS Wong, S Pipil, H Ozaki, Y Suzuki, W Iwasaki, Y Takei
Zoological Letters 2 (1), 15, 2016
|Molecular mechanisms underlying active desalination and low water permeability in the esophagus of eels acclimated to seawater|
Y Takei, MKS Wong, S Pipil, H Ozaki, Y Suzuki, W Iwasaki, M Kusakabe
American Journal of Physiology-Regulatory, Integrative and Comparative …, 2017
|Functional D-box sequences reset the circadian clock and drive mRNA rhythms|
H Yoshitane, Y Asano, A Sagami, S Sakai, Y Suzuki, H Okamura, ...
Communications biology 2 (1), 1-10, 2019
|Stability of RNA sequences derived from the coronavirus genome in human cells|
H Wakida, K Kawata, Y Yamaji, E Hattori, T Tsuchiya, Y Wada, H Ozaki, ...
Biochemical and Biophysical Research Communications, 2020
|Possible cross-feeding pathway of facultative methylotroph Methyloceanibacter caenitepidi Gela4 on methanotroph Methylocaldum marinum S8|
M Takeuchi, H Ozaki, S Hiraoka, Y Kamagata, S Sakata, H Yoshioka, ...
PloS one 14 (3), e0213535, 2019
|MOCCS: Clarifying DNA-binding motif ambiguity using ChIP-seq data|
H Ozaki, W Iwasaki
Computational biology and chemistry 63, 62-72, 2016
|Millefy: visualizing cell-to-cell heterogeneity in read coverage of single-cell RNA sequencing datasets|
H Ozaki, T Hayashi, U Mana, I Nikaido
BMC Genomics 21, 177, 2020
|An NMF-based approach to discover overlooked differentially expressed gene regions from single-cell RNA-seq data|
H Matsumoto, T Hayashi, H Ozaki, K Tsuyuzaki, M Umeda, T Iida, ...
NAR Genomics and Bioinformatics 2 (1), lqz020, 2020
|A sodium binding system alleviates acute salt stress during seawater acclimation in eels|
MKS Wong, T Tsukada, N Ogawa, S Pipil, H Ozaki, Y Suzuki, W Iwasaki, ...
Zoological letters 3 (1), 1-20, 2017
|Transomics analysis reveals allosteric and gene regulation axes for altered hepatic glucose-responsive metabolism in obesity|
T Kokaji, A Hatano, Y Ito, K Yugi, M Eto, K Morita, S Ohno, M Fujii, ...
Science Signaling 13 (660), 2020
|MotiMul: A significant discriminative sequence motif discovery algorithm with multiple testing correction|
K Mori, H Ozaki, T Fukunaga
|Integrated analysis of glycan and RNA in single cells|
F Minoshima, H Ozaki, H Tateno
|DDBJ Data Analysis Challenge: a machine learning competition to predict Arabidopsis chromatin feature annotations from DNA sequences|
E Kaminuma, Y Baba, M Mochizuki, H Matsumoto, H Ozaki, T Okayama, ...
Genes & Genetic Systems, 19-00034, 2020