Haruka Ozaki
Haruka Ozaki
Bioinformatics Laboratory, Faculty of Medicine, University of Tsukuba
Verified email at md.tsukuba.ac.jp - Homepage
Cited by
Cited by
Single-cell full-length total RNA sequencing uncovers dynamics of recursive splicing and enhancer RNAs
T Hayashi, H Ozaki, Y Sasagawa, M Umeda, H Danno, I Nikaido
Nature communications 9 (1), 1-16, 2018
CLOCK-controlled polyphonic regulation of circadian rhythms through canonical and noncanonical E-boxes
H Yoshitane, H Ozaki, H Terajima, NH Du, Y Suzuki, T Fujimori, N Kosaka, ...
Molecular and cellular biology 34 (10), 1776-1787, 2014
CapR: revealing structural specificities of RNA-binding protein target recognition using CLIP-seq data
T Fukunaga, H Ozaki, G Terai, K Asai, W Iwasaki, H Kiryu
Genome biology 15 (1), R16, 2014
ADARB1 catalyzes circadian A-to-I editing and regulates RNA rhythm
H Terajima, H Yoshitane, H Ozaki, Y Suzuki, S Shimba, S Kuroda, ...
Nature genetics 49 (1), 146-151, 2017
Somatic primary piRNA biogenesis driven by cis-acting RNA elements and trans-acting Yb
H Ishizu, YW Iwasaki, S Hirakata, H Ozaki, W Iwasaki, H Siomi, MC Siomi
Cell reports 12 (3), 429-440, 2015
Discovery of osmotic sensitive transcription factors in fish intestine via a transcriptomic approach
MKS Wong, H Ozaki, Y Suzuki, W Iwasaki, Y Takei
BMC genomics 15 (1), 1134, 2014
Parallel selection on gene copy number variations through evolution of three-spined stickleback genomes
S Hirase, H Ozaki, W Iwasaki
BMC genomics 15 (1), 735, 2014
Flexible selection of diversified Na+/K+-ATPase α-subunit isoforms for osmoregulation in teleosts
MKS Wong, S Pipil, H Ozaki, Y Suzuki, W Iwasaki, Y Takei
Zoological Letters 2 (1), 15, 2016
Molecular mechanisms underlying active desalination and low water permeability in the esophagus of eels acclimated to seawater
Y Takei, MKS Wong, S Pipil, H Ozaki, Y Suzuki, W Iwasaki, M Kusakabe
American Journal of Physiology-Regulatory, Integrative and Comparative …, 2017
Functional D-box sequences reset the circadian clock and drive mRNA rhythms
H Yoshitane, Y Asano, A Sagami, S Sakai, Y Suzuki, H Okamura, ...
Communications biology 2 (1), 1-10, 2019
Stability of RNA sequences derived from the coronavirus genome in human cells
H Wakida, K Kawata, Y Yamaji, E Hattori, T Tsuchiya, Y Wada, H Ozaki, ...
Biochemical and Biophysical Research Communications, 2020
Possible cross-feeding pathway of facultative methylotroph Methyloceanibacter caenitepidi Gela4 on methanotroph Methylocaldum marinum S8
M Takeuchi, H Ozaki, S Hiraoka, Y Kamagata, S Sakata, H Yoshioka, ...
PloS one 14 (3), e0213535, 2019
MOCCS: Clarifying DNA-binding motif ambiguity using ChIP-seq data
H Ozaki, W Iwasaki
Computational biology and chemistry 63, 62-72, 2016
Millefy: visualizing cell-to-cell heterogeneity in read coverage of single-cell RNA sequencing datasets
H Ozaki, T Hayashi, U Mana, I Nikaido
BMC Genomics 21, 177, 2020
An NMF-based approach to discover overlooked differentially expressed gene regions from single-cell RNA-seq data
H Matsumoto, T Hayashi, H Ozaki, K Tsuyuzaki, M Umeda, T Iida, ...
NAR Genomics and Bioinformatics 2 (1), lqz020, 2020
A sodium binding system alleviates acute salt stress during seawater acclimation in eels
MKS Wong, T Tsukada, N Ogawa, S Pipil, H Ozaki, Y Suzuki, W Iwasaki, ...
Zoological letters 3 (1), 1-20, 2017
Transomics analysis reveals allosteric and gene regulation axes for altered hepatic glucose-responsive metabolism in obesity
T Kokaji, A Hatano, Y Ito, K Yugi, M Eto, K Morita, S Ohno, M Fujii, ...
Science Signaling 13 (660), 2020
MotiMul: A significant discriminative sequence motif discovery algorithm with multiple testing correction
K Mori, H Ozaki, T Fukunaga
BioRxiv, 2020
Integrated analysis of glycan and RNA in single cells
F Minoshima, H Ozaki, H Tateno
bioRxiv, 2020
DDBJ Data Analysis Challenge: a machine learning competition to predict Arabidopsis chromatin feature annotations from DNA sequences
E Kaminuma, Y Baba, M Mochizuki, H Matsumoto, H Ozaki, T Okayama, ...
Genes & Genetic Systems, 19-00034, 2020
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