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Tetsuro Nagai (永井哲郎)
Tetsuro Nagai (永井哲郎)
Fukuoka University
Verified email at nagoya-u.jp - Homepage
Title
Cited by
Cited by
Year
Role of Computational Methods in Going beyond X-ray Crystallography to Explore Protein Structure and Dynamics
A Srivastava, T Nagai, A Srivastava, O Miyashita, F Tama
International journal of molecular sciences 19 (11), 3401, 2018
1002018
Critical size dependence of domain formation observed in coarse-grained simulations of bilayers composed of ternary lipid mixtures
GA Pantelopulos, T Nagai, A Bandara, A Panahi, JE Straub
The Journal of chemical physics 147 (9), 095101, 2017
632017
Position-Dependent Diffusion Constant of Molecules in Heterogeneous Systems as Evaluated by the Local Mean Squared Displacement
T Nagai, S Tsurumaki, R Urano, K Fujimoto, W Shinoda, S Okazaki
Journal of Chemical Theory and Computation 16 (12), 7239-7254, 2020
282020
Phase behavior of a lipid bilayer system studied by a replica-exchange molecular dynamics simulation
T Nagai, R Ueoka, Y Okamoto
Journal of the Physical Society of Japan 81 (2), 024002, 2012
212012
Prediction of self‐diffusion coefficients of chemically diverse pure liquids by all‐atom molecular dynamics simulations
H Baba, R Urano, T Nagai, S Okazaki
Journal of Computational Chemistry 43 (28), 1892-1900, 2022
182022
Exploring the impact of proteins on the line tension of a phase-separating ternary lipid mixture
A Bandara, A Panahi, GA Pantelopulos, T Nagai, JE Straub
The Journal of chemical physics 150 (20), 204702, 2019
182019
Replica-exchange molecular dynamics simulation of a lipid bilayer system with a coarse-grained model
T Nagai, Y Okamoto
Molecular Simulation 38 (5), 437-441, 2012
152012
Simulated tempering and magnetizing: Application of two-dimensional simulated tempering to the two-dimensional Ising model and its crossover
T Nagai, Y Okamoto
Physical Review E 86 (5), 056705, 2012
132012
Momentum removal to obtain the position‐dependent diffusion constant in constrained molecular dynamics simulation
K Fujimoto, T Nagai, T Yamaguchi
Journal of Computational Chemistry 42 (30), 2136-2144, 2021
112021
Mass-scaling replica-exchange molecular dynamics optimizes computational resources with simpler algorithm
T Nagai, T Takahashi
The Journal of chemical physics 141 (11), 114111, 2014
102014
Gaussian mixture model for coarse-grained modeling from XFEL
T Nagai, Y Mochizuki, Y Joti, F Tama, O Miyashita
Optics Express 26 (20), 26734-26749, 2018
82018
Crossover scaling in the two-dimensional three-state Potts model
WJ Tetsuro Nagai, Yuko Okamoto
Condensed Matter Physics 16 (2), 23605, 2013
8*2013
Global diffusion of hydrogen molecules in the heterogeneous structure of polymer electrolytes for fuel cells: Dynamic Monte Carlo combined with molecular dynamics calculations
T Nagai, S Okazaki
The Journal of Chemical Physics 157 (5), 054502, 2022
72022
Dynamic Monte Carlo calculation generating particle trajectories that satisfy the diffusion equation for heterogeneous systems with a position-dependent diffusion coefficient …
T Nagai, A Yoshimori, S Okazaki
The Journal of Chemical Physics 156 (15), 154506, 2022
72022
Three-dimensional free-energy landscape of hydrogen and oxygen molecules in polymer electrolyte membranes: Insight into diffusion paths
T Nagai, K Fujimoto, S Okazaki
The Journal of Chemical Physics 156 (4), 044507, 2022
72022
On the use of mass scaling for stable and efficient simulated tempering with molecular dynamics
T Nagai, GA Pantelopulos, T Takahashi, JE Straub
Journal of computational chemistry 37 (21), 2017-2028, 2016
72016
Application of simulated tempering and magnetizing to a two-dimensional Potts model
T Nagai, Y Okamoto, W Janke
Journal of Statistical Mechanics: Theory and Experiment 2013 (02), P02039, 2013
52013
In-situ observation of an anion exchange membrane at various humidity by X-ray scattering
K Yoshida, T Nagai, K Ohara, Y Shirase, K Miyatake, J Inukai
Journal of Molecular Liquids 391, 123197, 2023
42023
Cryo-Cooling Effect on DHFR Crystal Studied by Replica-Exchange Molecular Dynamics Simulations
T Nagai, F Tama, O Miyashita
Biophysical journal 116 (3), 395-405, 2019
42019
An exa-scale high-performance molecular dynamics simulation program: MODYLAS
Y Andoh, S Ichikawa, T Sakashita, K Fujimoto, N Yoshii, T Nagai, Z Tang, ...
The Journal of Chemical Physics 158 (19), 2023
32023
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Articles 1–20