Jinbo Xu

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	All	Since 2016
Citations	8805	5880
h-index	45	35
i10-index	85	60

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Co-authors

Sheng WangSpecialist, Tencent AI labVerified email at tencent.com
Jian PengUniversity of Illinois at Urbana-ChampaignVerified email at illinois.edu
Jianzhu MaPurdue UniversityVerified email at purdue.edu
Ming LiUniversity Professor, University of WaterlooVerified email at uwaterloo.ca
Bonnie BergerMITVerified email at mit.edu
Zhiyong WangToyota Technological Institute at ChicagoVerified email at ttic.edu
Siqi SunMicrosoftVerified email at microsoft.com
Rohit SinghMITVerified email at mit.edu
Shuai Cheng LiDepartment of Computer Science, City University of Hong KongVerified email at cityu.edu.hk
Somaye HashemifarColumbia UniversityVerified email at cumc.columbia.edu
Morten KallbergIllumina incVerified email at illumina.com
Xin GaoAssociate Professor, Computer Electrical and Mathematical Sciences and Engineering Division, KAUSTVerified email at kaust.edu.sa
Ying XuProfessor of Biochemistry and Molecular Biology, University of GeorgiaVerified email at uga.edu
Zhen LiChinese University of Hong Kong, Shenzhen (CUHKSZ)Verified email at cuhk.edu.cn
Tobin SosnickProfessor of Biochemistry and Molecular Biology, University of ChicagoVerified email at uchicago.edu
Karl F. FreedProfessor of Chemistry, Emeritis, University of ChicagoVerified email at uchicago.edu
Dongsup KimKAISTVerified email at kaist.ac.kr
Natalia MaltsevResearch Professor, Department of Human Genetics, The University of ChicagoVerified email at uchicago.edu
Bingqing XiePost doctoral scholar, University of ChicagoVerified email at medicine.bsd.uchicago.edu
T. Conrad GilliamProfessor of Genetics University of ChicagoVerified email at bsd.uchicago.edu

Jinbo Xu

Professor, Toyota Technological Institute at Chicago

Verified email at ttic.edu - Homepage

Machine Learning Algorithm and Optimization Computational Biology


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Template-based protein structure modeling using the RaptorX web server M Källberg, H Wang, S Wang, J Peng, Z Wang, H Lu, J Xu Nature protocols 7 (8), 1511-1522, 2012	1240	2012
Opportunities And Obstacles For Deep Learning In Biology And Medicine T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ... J R Soc Interface 15 (141), 2018	702	2018
Global alignment of multiple protein interaction networks with application to functional orthology detection R Singh, J Xu, B Berger Proceedings of the National Academy of Sciences 105 (35), 12763-12768, 2008	569	2008
Accurate de novo prediction of protein contact map by ultra-deep learning model S Wang, S Sun, Z Li, R Zhang, J Xu PLoS computational biology 13 (1), e1005324, 2017	443	2017
Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model S Wang, S Sun, Z Li, R Zhang, J Xu PLOS Computational Biology 13 (1), e1005324, 2017	443	2017
Protein secondary structure prediction using deep convolutional neural fields S Wang, J Peng, J Ma, J Xu Scientific reports 6, 2016	354	2016
Pairwise global alignment of protein interaction networks by matching neighborhood topology R Singh, J Xu, B Berger Annual International Conference on Research in Computational Molecular …, 2007	328	2007
RaptorX: exploiting structure information for protein alignment by statistical inference J Peng, J Xu Proteins: Structure, Function, and Bioinformatics 79 (S10), 161-171, 2011	319	2011
RAPTOR: optimal protein threading by linear programming J Xu, M Li, D Kim, Y Xu Journal of Bioinformatics and Computational Biology 1 (01), 95-117, 2003	314	2003
Identification of let-7–regulated oncofetal genes B Boyerinas, SM Park, N Shomron, MM Hedegaard, J Vinther, ... Cancer research 68 (8), 2587, 2008	255	2008
RaptorX-Property: a web server for protein structure property prediction S Wang, W Li, S Liu, J Xu Nucleic acids research 44 (W1), W430-W435, 2016	240	2016
Conditional neural fields J Peng, L Bo, J Xu Advances in neural information processing systems 22, 1419-1427, 2009	206	2009
RaptorX server: a resource for template-based protein structure modeling M Källberg, G Margaryan, S Wang, J Ma, J Xu Protein Structure Prediction, 17-27, 2014	171	2014
Protein threading using context-specific alignment potential J Ma, S Wang, F Zhao, J Xu Bioinformatics 29 (13), i257-i265, 2013	129	2013
Protein structure alignment beyond spatial proximity S Wang, J Ma, J Peng, J Xu Scientific reports 3, 1448, 2013	128	2013
A multiple‐template approach to protein threading J Peng, J Xu Proteins: Structure, Function, and Bioinformatics 79 (6), 1930-1939, 2011	125	2011
Predicting protein contact map using evolutionary and physical constraints by integer programming Z Wang, J Xu Bioinformatics 29 (13), i266-i273, 2013	115	2013
Protein 8‐class secondary structure prediction using conditional neural fields Z Wang, F Zhao, J Peng, J Xu Proteomics 11 (19), 3786-3792, 2011	110	2011
Rapid protein side-chain packing via tree decomposition J Xu Research in computational molecular biology, 423-439, 2005	110	2005
Low-homology protein threading J Peng, J Xu Bioinformatics 26 (12), i294-i300, 2010	108	2010

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