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Dari Kimanius
Dari Kimanius
Postdoc at MRC Laboratory of Molecular Biology
Verified email at mrc-lmb.cam.ac.uk
Title
Cited by
Cited by
Year
New tools for automated high-resolution cryo-EM structure determination in RELION-3
J Zivanov, T Nakane, BO Forsberg, D Kimanius, WJH Hagen, E Lindahl, ...
elife 7, e42166, 2018
39352018
Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2
D Kimanius, BO Forsberg, SHW Scheres, E Lindahl
elife 5, e18722, 2016
9892016
Characterisation of molecular motions in cryo-EM single-particle data by multi-body refinement in RELION
T Nakane, D Kimanius, E Lindahl, SHW Scheres
elife 7, e36861, 2018
4342018
New tools for automated cryo-EM single-particle analysis in RELION-4.0
D Kimanius, L Dong, G Sharov, T Nakane, SHW Scheres
Biochemical Journal 478 (24), 4169-4185, 2021
4232021
Structures of the human mitochondrial ribosome in native states of assembly
A Brown, S Rathore, D Kimanius, S Aibara, X Bai, J Rorbach, A Amunts, ...
Nature structural & molecular biology 24 (10), 866-869, 2017
1642017
Structure of the SARS-CoV-2 RNA-dependent RNA polymerase in the presence of favipiravir-RTP
K Naydenova, KW Muir, LF Wu, Z Zhang, F Coscia, MJ Peet, ...
Proceedings of the National Academy of Sciences 118 (7), e2021946118, 2021
1592021
Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
A Perez Boerema, S Aibara, B Paul, V Tobiasson, D Kimanius, ...
Nature plants 4 (4), 212-217, 2018
662018
Automated model building and protein identification in cryo-EM maps
K Jamali, L Käll, R Zhang, A Brown, D Kimanius, SHW Scheres
Nature, 1-2, 2024
532024
SAXS-guided metadynamics
D Kimanius, I Pettersson, G Schluckebier, E Lindahl, M Andersson
Journal of chemical theory and computation 11 (7), 3491-3498, 2015
512015
A graph neural network approach to automated model building in cryo-EM maps
K Jamali, D Kimanius, SHW Scheres
The Eleventh International Conference on Learning Representations, 2022
482022
Disease-specific tau filaments assemble via polymorphic intermediates
S Lövestam, D Li, JL Wagstaff, A Kotecha, D Kimanius, SH McLaughlin, ...
Nature 625 (7993), 119-125, 2024
262024
Exploiting prior knowledge about biological macromolecules in cryo-EM structure determination
D Kimanius, G Zickert, T Nakane, J Adler, S Lunz, CB Schönlieb, O Öktem, ...
IUCrJ 8 (1), 60-75, 2021
232021
Data-driven regularization lowers the size barrier of cryo-EM structure determination
D Kimanius, K Jamali, ME Wilkinson, S Lövestam, V Velazhahan, ...
Nature Methods, 1-6, 2024
142024
Uptake dynamics in the Lactose permease (LacY) membrane protein transporter
D Kimanius, ER Lindahl, M Andersson
Biophysical Journal 116 (3), 555a, 2019
102019
DynaMight: estimating molecular motions with improved reconstruction from cryo-EM images
J Schwab, D Kimanius, A Burt, T Dendooven, S Scheres
bioRxiv, 2023.10. 18.562877, 2023
52023
Sparse fourier backpropagation in cryo-em reconstruction
D Kimanius, K Jamali, S Scheres
Advances in Neural Information Processing Systems 35, 12395-12408, 2022
52022
Cryo-EM reconstruction of the chlororibosome to 3.2 Å resolution within 24 h
BO Forsberg, S Aibara, D Kimanius, B Paul, E Lindahl, A Amunts
IUCrJ 4 (6), 723-727, 2017
52017
An image processing pipeline for electron cryo-tomography in RELION-5
A Burt, B Toader, R Warshamanage, A von Kugelgen, E Pyle, J Zivanov, ...
bioRxiv, 2024.04. 26.591129, 2024
12024
Ghostbuster: A phase retrieval diffraction tomography algorithm for cryo-EM
J Yeo, BJ Daurer, D Kimanius, D Balakrishnan, T Bepler, YZ Tan, ND Loh
Ultramicroscopy 262, 113962, 2024
2024
Confronting heterogeneity in cryogenic electron microscopy data: Innovative strategies and future perspectives with data-driven methods
D Kimanius, J Schwab
Current Opinion in Structural Biology 86, 102815, 2024
2024
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Articles 1–20