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| Commensal–dendritic-cell interaction specifies a unique protective skin immune signature S Naik, N Bouladoux, JL Linehan, SJ Han, OJ Harrison, C Wilhelm, ... Nature 520 (7545), 104-108, 2015 | 720 | 2015 |
| Directional gene expression and antisense transcripts in sexual and asexual stages of Plasmodium falciparum MJ López-Barragán, J Lemieux, M Quiñones, KC Williamson, ... BMC genomics 12, 1-13, 2011 | 350 | 2011 |
| Microbiota-dependent sequelae of acute infection compromise tissue-specific immunity DM Da Fonseca, TW Hand, SJ Han, MY Gerner, AG Zaretsky, AL Byrd, ... Cell 163 (2), 354-366, 2015 | 263 | 2015 |
| Probiotic/prebiotic supplementation of antiretrovirals improves gastrointestinal immunity in SIV-infected macaques NR Klatt, LA Canary, X Sun, CL Vinton, NT Funderburg, DR Morcock, ... The Journal of clinical investigation 123 (2), 2013 | 186 | 2013 |
| Characterization of the Small Untranslated RNA RyhB and Its Regulon in Vibrio cholerae BM Davis, M Quinones, J Pratt, Y Ding, MK Waldor Journal of bacteriology 187 (12), 4005-4014, 2005 | 174 | 2005 |
| Intraluminal containment of commensal outgrowth in the gut during infection-induced dysbiosis MJ Molloy, JR Grainger, N Bouladoux, TW Hand, LY Koo, S Naik, ... Cell host & microbe 14 (3), 318-328, 2013 | 164 | 2013 |
| Dysbiotic bacteria translocate in progressive SIV infection Z Klase, A Ortiz, C Deleage, JC Mudd, M Quiñones, E Schwartzman, ... Mucosal immunology 8 (5), 1009-1020, 2015 | 144 | 2015 |
| LexA cleavage is required for CTX prophage induction M Quinones, HH Kimsey, MK Waldor Molecular cell 17 (2), 291-300, 2005 | 124 | 2005 |
| Nephele: a cloud platform for simplified, standardized and reproducible microbiome data analysis N Weber, D Liou, J Dommer, P MacMenamin, M Quiñones, I Misner, ... Bioinformatics 34 (8), 1411-1413, 2018 | 122 | 2018 |
| Unipro UGENE NGS pipelines and components for variant calling, RNA-seq and ChIP-seq data analyses O Golosova, R Henderson, Y Vaskin, A Gabrielian, G Grekhov, ... PeerJ 2, e644, 2014 | 114 | 2014 |
| The extent of sequence complementarity correlates with the potency of cellular miRNA-mediated restriction of HIV-1 L Houzet, Z Klase, ML Yeung, A Wu, SY Le, M Quinones, KT Jeang Nucleic acids research 40 (22), 11684-11696, 2012 | 69 | 2012 |
| Whole-genome sequencing of Mycobacterium tuberculosis provides insight into the evolution and genetic composition of drug-resistant tuberculosis in Belarus KR Wollenberg, CA Desjardins, A Zalutskaya, V Slodovnikova, AJ Oler, ... Journal of clinical microbiology 55 (2), 457-469, 2017 | 62 | 2017 |
| The impact of anthelmintic treatment on human gut microbiota based on cross-sectional and pre-and postdeworming comparisons in Western Kenya AV Easton, M Quiñones, I Vujkovic-Cvijin, RG Oliveira, S Kepha, ... MBio 10 (2), 10.1128/mbio. 00519-19, 2019 | 49 | 2019 |
| The normal breast microenvironment of premenopausal women differentially influences the behavior of breast cancer cells in vitro and in vivo JM Fleming, TC Miller, M Quinones, Z Xiao, X Xu, MJ Meyer, E Ginsburg, ... BMC medicine 8, 1-21, 2010 | 49 | 2010 |
| Long-term antibiotic exposure promotes mortality after systemic fungal infection by driving lymphocyte dysfunction and systemic escape of commensal bacteria RA Drummond, JV Desai, EE Ricotta, M Swamydas, C Deming, S Conlan, ... Cell host & microbe 30 (7), 1020-1033. e6, 2022 | 45 | 2022 |
| In depth annotation of the Anopheles gambiae mosquito midgut transcriptome A Padron, A Molina-Cruz, M Quinones, JMC Ribeiro, U Ramphul, ... BMC genomics 15, 1-14, 2014 | 38 | 2014 |
| Colitis susceptibility in p47 phox−/− mice is mediated by the microbiome EL Falcone, L Abusleme, M Swamydas, MS Lionakis, L Ding, AP Hsu, ... Microbiome 4, 1-16, 2016 | 36 | 2016 |
| APECED‐associated hepatitis: clinical, biochemical, histological and treatment data from a large, predominantly American cohort DM Chascsa, EMN Ferré, Y Hadjiyannis, H Alao, M Natarajan, ... Hepatology 73 (3), 1088-1104, 2021 | 32 | 2021 |
| Composition of the intestinal microbiota in extended-spectrum β-lactamase-producing Enterobacteriaceae carriers and non-carriers in Thailand P Piewngam, M Quiñones, W Thirakittiwatthana, T Yungyuen, M Otto, ... International journal of antimicrobial agents 53 (4), 435-441, 2019 | 30 | 2019 |
