|Announcing the worldwide protein data bank|
H Berman, K Henrick, H Nakamura
Nature Structural & Molecular Biology 10 (12), 980-980, 2003
|The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data|
H Berman, K Henrick, H Nakamura, JL Markley
Nucleic acids research 35 (suppl_1), D301-D303, 2007
|The Protein Data Bank and the challenge of structural genomics|
HM Berman, TN Bhat, PE Bourne, Z Feng, G Gilliland, H Weissig, ...
Nature structural biology 7 (11), 957-959, 2000
|Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices|
K Ogata, S Morikawa, H Nakamura, A Sekikawa, T Inoue, H Kanai, ...
Cell 79 (4), 639-648, 1994
|Zc3h12a is an RNase essential for controlling immune responses by regulating mRNA decay|
K Matsushita, O Takeuchi, DM Standley, Y Kumagai, T Kawagoe, ...
Nature 458 (7242), 1185-1190, 2009
|Multicanonical ensemble generated by molecular dynamics simulation for enhanced conformational sampling of peptides|
N Nakajima, H Nakamura, A Kidera
The Journal of Physical Chemistry B 101 (5), 817-824, 1997
|An effective solvation term based on atomic occupancies for use in protein simulations|
PFW Stouten, C Frömmel, H Nakamura, C Sander
Molecular Simulation 10 (2-6), 97-120, 1993
|Atomic structure of the RuvC resolvase: a Holliday junction-specific endonuclease from E. coli|
M Ariyoshi, DG Vassylyev, H Iwasaki, H Nakamura, H Shinagawa, ...
Cell 78 (6), 1063-1072, 1994
|Roles of electrostatic interaction in proteins|
Quarterly reviews of biophysics 29 (1), 1-90, 1996
|Solution structure of a DNA-binding unit of Myb: a helix-turn-helix-related motif with conserved tryptophans forming a hydrophobic core|
K Ogata, H Hojo, S Aimoto, T Nakai, H Nakamura, A Sarai, S Ishii, ...
Proceedings of the National Academy of Sciences 89 (14), 6428-6432, 1992
|Disordered domains and high surface charge confer hubs with the ability to interact with multiple proteins in interaction networks|
A Patil, H Nakamura
FEBS letters 580 (8), 2041-2045, 2006
|Segmental isotope labeling for protein NMR using peptide splicing|
T Yamazaki, T Otomo, N Oda, Y Kyogoku, K Uegaki, N Ito, Y Ishino, ...
Journal of the American Chemical Society 120 (22), 5591-5592, 1998
|How does RNase H recognize a DNA. RNA hybrid?|
H Nakamura, Y Oda, S Iwai, H Inoue, E Ohtsuka, S Kanaya, S Kimura, ...
Proceedings of the National Academy of Sciences 88 (24), 11535-11539, 1991
|Structural details of ribonuclease H from Escherichia coli as refined to an atomic resolution|
K Katayanagi, M Miyagawa, M Matsushima, M Ishikawa, S Kanaya, ...
Journal of molecular biology 223 (4), 1029-1052, 1992
|Structural classification of CDR‐H3 in antibodies|
H Shirai, A Kidera, H Nakamura
FEBS letters 399 (1-2), 1-8, 1996
|The cavity in the hydrophobic core of Myb DNA-binding domain is reserved for DNA recognition and trans-activation|
K Ogata, C Kanei-Ishii, M Sasaki, H Hatanaka, A Nagadoi, M Enari, ...
Nature structural biology 3 (2), 178, 1996
|Presto (protein engineering simulator): a vectorized molecular mechanics program for biopolymers|
K Morikami, T Nakai, A Kidera, M Saito, H Nakamura
Computers & chemistry 16 (3), 243-248, 1992
|Identification of protein biochemical functions by similarity search using the molecular surface database eF‐site|
K Kinoshita, H Nakamura
Protein Science 12 (8), 1589-1595, 2003
|Computer-aided antibody design|
D Kuroda, H Shirai, MP Jacobson, H Nakamura
Protein engineering, design & selection 25 (10), 507-522, 2012
|Comparison of the free and DNA-complexed forms of the DMA-binding domain from c-Myb|
K Ogata, S Morikawa, H Nakamura, H Hojo, S Yoshimura, R Zhang, ...
Nature structural biology 2 (4), 309-320, 1995