| The medaka draft genome and insights into vertebrate genome evolution M Kasahara, K Naruse, S Sasaki, Y Nakatani, W Qu, B Ahsan, T Yamada, ... Nature 447 (7145), 714-719, 2007 | 1216 | 2007 |
| The Genome Sequence of Silkworm, Bombyx mori K Mita, M Kasahara, S Sasaki, Y Nagayasu, T Yamada, H Kanamori, ... DNA research 11 (1), 27-35, 2004 | 820 | 2004 |
| The genome of a lepidopteran model insect, the silkworm Bombyx mori International Silkworm Genome Consortium Insect Biochem Mol Biol 38 (12), 1036-1045, 2008 | 705 | 2008 |
| Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites S Sasaki, CC Mello, A Shimada, Y Nakatani, S Hashimoto, M Ogawa, ... Science 323 (5912), 401-404, 2009 | 144 | 2009 |
| Introducing difference recurrence relations for faster semi-global alignment of long sequences H Suzuki, M Kasahara BMC bioinformatics 19, 33-47, 2018 | 129 | 2018 |
| Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory K Fukushima, X Fang, D Alvarez-Ponce, H Cai, L Carretero-Paulet, ... Nature Ecology & Evolution 1 (3), 0059, 2017 | 128 | 2017 |
| Performance comparison of second-and third-generation sequencers using a bacterial genome with two chromosomes M Miyamoto, D Motooka, K Gotoh, T Imai, K Yoshitake, N Goto, T Iida, ... BMC genomics 15, 1-9, 2014 | 126 | 2014 |
| Large Scale Full-Length cDNA Sequencing Reveals a Unique Genomic Landscape in a Lepidopteran Model Insect, Bombyx mori Y Suetsugu, R Futahashi, H Kanamori, K Kadono-Okuda, S Sasanuma, ... G3: Genes, Genomes, Genetics 3 (9), 1481-1492, 2013 | 111 | 2013 |
| UTGB/medaka: genomic resource database for medaka biology B Ahsan, D Kobayashi, T Yamada, M Kasahara, S Sasaki, TL Saito, ... Nucleic acids research 36 (suppl_1), D747-D752, 2007 | 39 | 2007 |
| Acceleration of nucleotide semi-global alignment with adaptive banded dynamic programming H Suzuki, M Kasahara BioRxiv, 130633, 2017 | 31 | 2017 |
| MoMI-G: modular multi-scale integrated genome graph browser TT Yokoyama, Y Sakamoto, M Seki, Y Suzuki, M Kasahara BMC bioinformatics 20, 1-14, 2019 | 29 | 2019 |
| Identification and genetic diversity analysis of a male-sterile gene (MS1) in Japanese cedar (Cryptomeria japonica D. Don) Y Hasegawa, S Ueno, FJ Wei, A Matsumoto, K Uchiyama, T Ujino-Ihara, ... Scientific Reports 11 (1), 1496, 2021 | 28 | 2021 |
| Large-scale genome sequence processing M Kasahara, S Morishita Imperial College Press, 2006 | 21 | 2006 |
| Development of diagnostic PCR and LAMP markers for MALE STERILITY 1 (MS1) in Cryptomeria japonica D. Don Y Hasegawa, S Ueno, FJ Wei, A Matsumoto, T Ujino-Ihara, K Uchiyama, ... BMC Research Notes 13, 1-6, 2020 | 19 | 2020 |
| Cost-effective sequencing of full-length cDNA clones powered by a de novo-reference hybrid assembly RM Kuroshu, J Watanabe, S Sugano, S Morishita, Y Suzuki, M Kasahara PLoS One 5 (5), e10517, 2010 | 18 | 2010 |
| Long read sequencing reveals a novel class of structural aberrations in cancers: identification and characterization of cancerous local amplifications Y Sakamoto, L Xu, M Seki, TT Yokoyama, M Kasahara, Y Kashima, ... bioRxiv, 620047, 2019 | 11 | 2019 |
| LPMX: a pure rootless composable container system X Yang, M Kasahara BMC bioinformatics 23 (1), 112, 2022 | 2 | 2022 |
| Single-nucleotide substitution determines pollen production in Japanese cedar H Kakui, T Ujino-Ihara, Y Hasegawa, E Tsurisaki, N Futamura, J Iwai, ... bioRxiv, 2022.03. 17.484665, 2022 | 1 | 2022 |
| Draft Genome Sequence of Medaka (Orizias latipes) and Its Useful Applications (A Synthesis of the Molecular Phylogeny and the Comparative Genomics in Fishes, Symposium … M Kasahara, S Sasaki, Y Nakatani, W Qu, A Budrul, T Yamada, ... Zoological science 22 (12), 1395-1396, 2005 | | 2005 |
| MEDAKA GENOME SEQUENCING AND THE VERTEBRATE GENOME EVOLUTION (Genetics, Abstracts of papers presented at the 76^< th> Annual Meeting of the Zoological Society of Japan) K Naruse, Y Nakatani, W Qu, M Kasahara, S Sasaki, T Yamada, A Budrul, ... Zoological science 22 (12), 1511-1512, 2005 | | 2005 |
