| The OPEP protein model: from single molecules, amyloid formation, crowding and hydrodynamics to DNA/RNA systems F Sterpone, S Melchionna, P Tuffery, S Pasquali, N Mousseau, ... Chemical Society Reviews 43 (13), 4871-4893, 2014 | 165 | 2014 |
| WEBnm@ v2. 0: Web server and services for comparing protein flexibility SP Tiwari, E Fuglebakk, SM Hollup, L Skjærven, T Cragnolini, ... BMC bioinformatics 15, 1-12, 2014 | 112 | 2014 |
| Coarse-grained simulations of RNA and DNA duplexes T Cragnolini, P Derreumaux, S Pasquali The Journal of Physical Chemistry B 117 (27), 8047-8060, 2013 | 101 | 2013 |
| Epock: rapid analysis of protein pocket dynamics B Laurent, M Chavent, T Cragnolini, ACE Dahl, S Pasquali, ... Bioinformatics 31 (9), 1478-1480, 2015 | 90 | 2015 |
| Coarse-grained HiRE-RNA model for ab initio RNA folding beyond simple molecules, including noncanonical and multiple base pairings T Cragnolini, Y Laurin, P Derreumaux, S Pasquali Journal of chemical theory and computation 11 (7), 3510-3522, 2015 | 70 | 2015 |
| Coarse-grained simulations complemented by atomistic molecular dynamics provide new insights into folding and unfolding of human telomeric G-quadruplexes P Stadlbauer, L Mazzanti, T Cragnolini, DJ Wales, P Derreumaux, ... Journal of Chemical Theory and Computation 12 (12), 6077-6097, 2016 | 44 | 2016 |
| UnityMol: interactive scientific visualization for integrative biology S Doutreligne, T Cragnolini, S Pasquali, P Derreumaux, M Baaden 2014 IEEE 4th Symposium on Large Data Analysis and Visualization (LDAV), 109-110, 2014 | 43 | 2014 |
| Integration of mass spectrometry data for structural biology HM Britt, T Cragnolini, K Thalassinos Chemical Reviews 122 (8), 7952-7986, 2021 | 41 | 2021 |
| The crystal structure of the 5΄ functional domain of the transcription riboregulator 7SK D Martinez-Zapien, P Legrand, AG McEwen, F Proux, T Cragnolini, ... Nucleic acids research 45 (6), 3568-3579, 2017 | 36 | 2017 |
| Cyclic ion mobility–collision activation experiments elucidate protein behavior in the gas phase C Eldrid, A Ben-Younis, J Ujma, H Britt, T Cragnolini, S Kalfas, ... Journal of the American Society for Mass Spectrometry 32 (6), 1545-1552, 2021 | 35 | 2021 |
| TEMPy2: a Python library with improved 3D electron microscopy density-fitting and validation workflows T Cragnolini, H Sahota, AP Joseph, A Sweeney, S Malhotra, D Vasishtan, ... Acta Crystallographica Section D: Structural Biology 77 (1), 41-47, 2021 | 29 | 2021 |
| Multifunctional energy landscape for a DNA G-quadruplex: An evolved molecular switch T Cragnolini, D Chakraborty, J Šponer, P Derreumaux, S Pasquali, ... The Journal of Chemical Physics 147 (15), 2017 | 28 | 2017 |
| Ab initio RNA folding T Cragnolini, P Derreumaux, S Pasquali Journal of Physics: Condensed Matter 27 (23), 233102, 2015 | 21 | 2015 |
| Cryo‐electron microscopy targets in CASP13: overview and evaluation of results A Kryshtafovych, S Malhotra, B Monastyrskyy, T Cragnolini, AP Joseph, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1128-1140, 2019 | 18 | 2019 |
| UnityMol: interactive and ludic visual manipulation of coarse-grained RNA and other biomolecules S Doutreligne, C Gageat, T Cragnolini, A Taly, S Pasquali, P Derreumaux, ... 2015 IEEE 1st international workshop on virtual and augmented reality for …, 2015 | 15 | 2015 |
| A polymer physics framework for the entropy of arbitrary pseudoknots O Kimchi, T Cragnolini, MP Brenner, LJ Colwell Biophysical journal 117 (3), 520-532, 2019 | 13 | 2019 |
| Cryo‐EM targets in CASP14 T Cragnolini, A Kryshtafovych, M Topf Proteins: Structure, Function, and Bioinformatics 89 (12), 1949-1958, 2021 | 10 | 2021 |
| Integrating model simulation tools and cryo‐electron microscopy JG Beton, T Cragnolini, M Kaleel, T Mulvaney, A Sweeney, M Topf Wiley Interdisciplinary Reviews: Computational Molecular Science 13 (3), e1642, 2023 | 5 | 2023 |
| Linking gas-phase and solution-phase protein unfolding via mobile proton simulations C Eldrid, T Cragnolini, A Ben-Younis, J Zou, DP Raleigh, K Thalassinos Analytical Chemistry 94 (46), 16113-16121, 2022 | 4 | 2022 |
| RIBFIND2: identifying rigid bodies in protein and nucleic acid structures S Malhotra, T Mulvaney, T Cragnolini, H Sidhu, AP Joseph, JG Beton, ... Nucleic Acids Research 51 (18), 9567-9575, 2023 | 3 | 2023 |
Samuela PasqualiUniversity of ParisVerified email at u-paris.fr
