Structured sparse error coding for face recognition with occlusion XX Li, DQ Dai, XF Zhang, CX Ren IEEE transactions on image processing 22 (5), 1889-1900, 2013 | 123 | 2013 |
Detecting temporal protein complexes from dynamic protein-protein interaction networks L Ou-Yang, DQ Dai, XL Li, M Wu, XF Zhang, P Yang BMC bioinformatics 15, 1-14, 2014 | 79 | 2014 |
Determining minimum set of driver nodes in protein-protein interaction networks XF Zhang, L Ou-Yang, Y Zhu, MY Wu, DQ Dai BMC bioinformatics 16, 1-13, 2015 | 73 | 2015 |
A graph regularized generalized matrix factorization model for predicting links in biomedical bipartite networks ZC Zhang, XF Zhang, M Wu, L Ou-Yang, XM Zhao, XL Li Bioinformatics 36 (11), 3474-3481, 2020 | 60 | 2020 |
Biomarker identification and cancer classification based on microarray data using laplace naive bayes model with mean shrinkage MY Wu, DQ Dai, Y Shi, H Yan, XF Zhang IEEE/ACM transactions on computational biology and bioinformatics 9 (6 …, 2012 | 57 | 2012 |
Detecting overlapping protein complexes based on a generative model with functional and topological properties XF Zhang, DQ Dai, L Ou-Yang, H Yan BMC bioinformatics 15, 1-15, 2014 | 54 | 2014 |
A Framework for Incorporating Functional Interrelationships into Protein Function Prediction Algorithms XF Zhang, DQ Dai IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB) 9 …, 2012 | 51 | 2012 |
Incorporating prior information into differential network analysis using non-paranormal graphical models XF Zhang, L Ou-Yang, H Yan Bioinformatics 33 (16), 2436-2445, 2017 | 50 | 2017 |
Differential network analysis from cross-platform gene expression data XF Zhang, L Ou-Yang, XM Zhao, H Yan Scientific reports 6 (1), 34112, 2016 | 47 | 2016 |
Detecting protein complexes from signed protein-protein interaction networks L Ou-Yang, DQ Dai, XF Zhang IEEE/ACM transactions on computational biology and bioinformatics 12 (6 …, 2015 | 47 | 2015 |
Protein complex detection via weighted ensemble clustering based on Bayesian nonnegative matrix factorization L Ou-Yang, DQ Dai, XF Zhang PloS one 8 (5), e62158, 2013 | 36 | 2013 |
EnImpute: imputing dropout events in single-cell RNA-sequencing data via ensemble learning XF Zhang, L Ou-Yang, S Yang, XM Zhao, X Hu, H Yan Bioinformatics 35 (22), 4827-4829, 2019 | 35 | 2019 |
Protein complexes discovery based on protein-protein interaction data via a regularized sparse generative network model XF Zhang, DQ Dai, XX Li IEEE/ACM Transactions on Computational Biology and Bioinformatics 9 (3), 857-870, 2012 | 34 | 2012 |
Identifying gene network rewiring by integrating gene expression and gene network data T Xu, L Ou-Yang, X Hu, XF Zhang IEEE/ACM Transactions on Computational Biology and Bioinformatics 15 (6 …, 2018 | 32 | 2018 |
Cancer subtype discovery and biomarker identification via a new robust network clustering algorithm MY Wu, DQ Dai, XF Zhang, Y Zhu PloS one 8 (6), e66256, 2013 | 29 | 2013 |
scTSSR: gene expression recovery for single-cell RNA sequencing using two-side sparse self-representation K Jin, L Ou-Yang, XM Zhao, H Yan, XF Zhang Bioinformatics 36 (10), 3131-3138, 2020 | 28 | 2020 |
A multi-network clustering method for detecting protein complexes from multiple heterogeneous networks L Ou-Yang, H Yan, XF Zhang BMC bioinformatics 18, 23-34, 2017 | 28 | 2017 |
Exploring overlapping functional units with various structure in protein interaction networks XF Zhang, DQ Dai, L Ou-Yang, MY Wu Public Library of Science 7 (8), e43092, 2012 | 26 | 2012 |
Regularized logistic regression with network-based pairwise interaction for biomarker identification in breast cancer MY Wu, XF Zhang, DQ Dai, L Ou-Yang, Y Zhu, H Yan BMC bioinformatics 17, 1-18, 2016 | 25 | 2016 |
Differential network analysis by simultaneously considering changes in gene interactions and gene expression JJ Tu, L Ou-Yang, Y Zhu, H Yan, H Qin, XF Zhang Bioinformatics 37 (23), 4414-4423, 2021 | 23 | 2021 |