フォロー
Kei-ichi Okazaki
タイトル
引用先
引用先
Dynamic energy landscape view of coupled binding and protein conformational change: induced-fit versus population-shift mechanisms
K Okazaki, S Takada
Proceedings of the National Academy of Sciences 105 (32), 11182-11187, 2008
3752008
Multiple-basin energy landscapes for large-amplitude conformational motions of proteins: Structure-based molecular dynamics simulations
K Okazaki, N Koga, S Takada, JN Onuchic, PG Wolynes
Proceedings of the National Academy of Sciences 103 (32), 11844-11849, 2006
3472006
CafeMol: A coarse-grained biomolecular simulator for simulating proteins at work
H Kenzaki, N Koga, N Hori, R Kanada, W Li, K Okazaki, XQ Yao, ...
Journal of Chemical Theory and Computation 7 (6), 1979-1989, 2011
2102011
Phosphate release coupled to rotary motion of F1-ATPase
K Okazaki, G Hummer
Proceedings of the National Academy of Sciences 110 (41), 16468-16473, 2013
1002013
Processive chitinase is Brownian monorail operated by fast catalysis after peeling rail from crystalline chitin
A Nakamura, K Okazaki, T Furuta, M Sakurai, R Iino
Nature Communications 9 (1), 3814, 2018
622018
Elasticity, friction, and pathway of γ-subunit rotation in FoF1-ATP synthase
K Okazaki, G Hummer
Proceedings of the National Academy of Sciences 112 (34), 10720-10725, 2015
542015
Transition path sampling of rare events by shooting from the top
H Jung, K Okazaki, G Hummer
The Journal of chemical physics 147 (15), 2017
492017
Temperature-enhanced association of proteins due to electrostatic interaction: A coarse-grained simulation of actin–myosin binding
K Okazaki, T Sato, M Takano
Journal of the American Chemical Society 134 (21), 8918-8925, 2012
462012
Protein folds vs. protein folding: Differing questions, different challenges
SJ Chen, M Hassan, RL Jernigan, K Jia, D Kihara, A Kloczkowski, ...
Proceedings of the National Academy of Sciences 120 (1), e2214423119, 2023
442023
Structural comparison of F1-ATPase: interplay among enzyme structures, catalysis, and rotations
K Okazaki, S Takada
Structure 19 (4), 588-598, 2011
422011
F1-ATPase conformational cycle from simultaneous single-molecule FRET and rotation measurements
M Sugawa, K Okazaki, M Kobayashi, T Matsui, G Hummer, T Masaike, ...
Proceedings of the National Academy of Sciences 113 (21), E2916-E2924, 2016
372016
Mechanism of the electroneutral sodium/proton antiporter PaNhaP from transition-path shooting
K Okazaki, D Wöhlert, J Warnau, H Jung, Ö Yildiz, W Kühlbrandt, ...
Nature communications 10 (1), 1742, 2019
362019
Curvature induction and sensing of the F-BAR protein Pacsin1 on lipid membranes via molecular dynamics simulations
MI Mahmood, H Noguchi, K Okazaki
Scientific Reports 9 (1), 14557, 2019
352019
Paddling mechanism for the substrate translocation by AAA+ motor revealed by multiscale molecular simulations
N Koga, T Kameda, K Okazaki, S Takada
Proceedings of the National Academy of Sciences 106 (43), 18237-18242, 2009
352009
Optimizing Gō-MARTINI coarse-grained model for F-BAR protein on lipid membrane
MI Mahmood, AB Poma, K Okazaki
Frontiers in molecular biosciences 8, 619381, 2021
282021
Learning reaction coordinates via cross-entropy minimization: Application to alanine dipeptide
Y Mori, K Okazaki, T Mori, K Kim, N Matubayasi
The Journal of Chemical Physics 153 (5), 2020
222020
Explaining reaction coordinates of alanine dipeptide isomerization obtained from deep neural networks using Explainable Artificial Intelligence (XAI)
T Kikutsuji, Y Mori, K Okazaki, T Mori, K Kim, N Matubayasi
The journal of chemical physics 156 (15), 2022
162022
Ion Binding and Selectivity of the Na+/H+ Antiporter MjNhaP1 from Experiment and Simulation
J Warnau, D Wöhlert, K Okazaki, O Yildiz, AP Gamiz-Hernandez, ...
The Journal of Physical Chemistry B 124 (2), 336-344, 2019
102019
Molecular mechanism on forcible ejection of ATPase inhibitory factor 1 from mitochondrial ATP synthase
R Kobayashi, H Ueno, K Okazaki, H Noji
Nature Communications 14 (1), 1682, 2023
92023
Crystalline chitin hydrolase is a burnt-bridge Brownian motor
A Nakamura, K Okazaki, T Furuta, M Sakurai, J Ando, R Iino
Biophysics and Physicobiology 17, 51-58, 2020
62020
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論文 1–20