|WoLF PSORT: protein localization predictor|
P Horton, KJ Park, T Obayashi, N Fujita, H Harada, CJ Adams-Collier, ...
Nucleic acids research 35 (suppl_2), W585-W587, 2007
|Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis|
MY Hirai, K Sugiyama, Y Sawada, T Tohge, T Obayashi, A Suzuki, R Araki, ...
Proceedings of the National Academy of Sciences 104 (15), 6478-6483, 2007
|12-oxo-phytodienoic acid triggers expression of a distinct set of genes and plays a role in wound-induced gene expression in Arabidopsis|
N Taki, Y Sasaki-Sekimoto, T Obayashi, A Kikuta, K Kobayashi, T Ainai, ...
Plant physiology 139 (3), 1268-1283, 2005
|Co‐expression tools for plant biology: opportunities for hypothesis generation and caveats|
B Usadel, T Obayashi, M Mutwil, FM Giorgi, GW Bassel, M Tanimoto, ...
Plant, cell & environment 32 (12), 1633-1651, 2009
|ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis|
T Obayashi, K Kinoshita, K Nakai, M Shibaoka, S Hayashi, M Saeki, ...
Nucleic acids research 35 (suppl_1), D863-D869, 2007
|ATTED-II provides coexpressed gene networks for Arabidopsis|
T Obayashi, S Hayashi, M Saeki, H Ohta, K Kinoshita
Nucleic acids research 37 (suppl_1), D987-D991, 2009
|Coordinated activation of metabolic pathways for antioxidants and defence compounds by jasmonates and their roles in stress tolerance in Arabidopsis|
Y Sasaki‐Sekimoto, N Taki, T Obayashi, M Aono, F Matsumoto, N Sakurai, ...
The Plant Journal 44 (4), 653-668, 2005
|Protein subcellular localization prediction with WoLF PSORT|
P Horton, KJ Park, T Obayashi, K Nakai
Proceedings of the 4th Asia-Pacific Bioinformatics Conference, 39-48, 2006
|Rank of correlation coefficient as a comparable measure for biological significance of gene coexpression|
T Obayashi, K Kinoshita
DNA research 16 (5), 249-260, 2009
|ATTED-II updates: condition-specific gene coexpression to extend coexpression analyses and applications to a broad range of flowering plants|
T Obayashi, K Nishida, K Kasahara, K Kinoshita
Plant and cell physiology 52 (2), 213-219, 2011
|ATTED-II in 2016: a plant coexpression database towards lineage-specific coexpression|
Y Aoki, Y Okamura, S Tadaka, K Kinoshita, T Obayashi
Plant and Cell Physiology 57 (1), e5-e5, 2016
|COXPRESdb: a database of coexpressed gene networks in mammals|
T Obayashi, S Hayashi, M Shibaoka, M Saeki, H Ohta, K Kinoshita
Nucleic acids research 36 (suppl_1), D77-D82, 2007
|Basic helix-loop-helix transcription factors JASMONATE-ASSOCIATED MYC2-LIKE1 (JAM1), JAM2, and JAM3 are negative regulators of jasmonate responses in Arabidopsis|
Y Sasaki-Sekimoto, Y Jikumaru, T Obayashi, H Saito, S Masuda, ...
Plant physiology 163 (1), 291-304, 2013
|Gene expression profiling of the tetrapyrrole metabolic pathway in Arabidopsis with a mini-array system|
F Matsumoto, T Obayashi, Y Sasaki-Sekimoto, H Ohta, K Takamiya, ...
Plant physiology 135 (4), 2379-2391, 2004
|Regulation of root greening by light and auxin/cytokinin signaling in Arabidopsis|
K Kobayashi, S Baba, T Obayashi, M Sato, K Toyooka, M Keränen, ...
The Plant Cell 24 (3), 1081-1095, 2012
|COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems|
Y Okamura, Y Aoki, T Obayashi, S Tadaka, S Ito, T Narise, K Kinoshita
Nucleic acids research 43 (D1), D82-D86, 2015
|ATTED-II in 2018: a plant coexpression database based on investigation of the statistical property of the mutual rank index|
T Obayashi, Y Aoki, S Tadaka, Y Kagaya, K Kinoshita
Plant and Cell Physiology 59 (1), e3-e3, 2018
|ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants|
T Obayashi, Y Okamura, S Ito, S Tadaka, Y Aoki, M Shirota, K Kinoshita
Plant and Cell Physiology 55 (1), e6-e6, 2014
|COXPRESdb: a database to compare gene coexpression in seven model animals|
T Obayashi, K Kinoshita
Nucleic acids research 39 (suppl_1), D1016-D1022, 2010
|COXPRESdb: a database of comparative gene coexpression networks of eleven species for mammals|
T Obayashi, Y Okamura, S Ito, S Tadaka, IN Motoike, K Kinoshita
Nucleic acids research 41 (D1), D1014-D1020, 2012