Attila Egri-Nagy
Attila Egri-Nagy
Associate Professor of Mathematics
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Hierarchical coordinate systems for understanding complexity and its evolution, with applications to genetic regulatory networks
A Egri-Nagy, CL Nehaniv
Artificial Life 14 (3), 299-312, 2008
Group-theoretic models of the inversion process in bacterial genomes
A Egri-Nagy, V Gebhardt, MM Tanaka, AR Francis
Journal of Mathematical Biology 69 (1), 243-265, 2014
Algebraic properties of automata associated to Petri nets and applications to computation in biological systems
A Egri-Nagy, CL Nehaniv
BioSystems 94 (1-2), 135-144, 2008
Algebraic hierarchical decomposition of finite state automata: Comparison of implementations for Krohn-Rhodes Theory
A Egri-Nagy, CL Nehaniv
International Conference on Implementation and Application of Automata, 315-316, 2004
Symmetry structure in discrete models of biochemical systems: natural subsystems and the weak control hierarchy in a new model of computation driven by interactions
CL Nehaniv, J Rhodes, A Egri-Nagy, P Dini, ER Morris, G Horváth, ...
Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2015
Automatic analysis of computation in biochemical reactions
A Egri-Nagy, CL Nehaniv, JL Rhodes, MJ Schilstra
BioSystems 94 (1-2), 126-134, 2008
Evolvability of the genotype-phenotype relation in populations of self-replicating digital organisms in a Tierra-like system
A Egri-Nagy, CL Nehaniv
European Conference on Artificial Life, 238-247, 2003
Computing finite semigroups
J East, A Egri-Nagy, JD Mitchell, Y Péresse
Journal of Symbolic Computation 92, 110-155, 2019
The NetBuilder'project: development of a tool for constructing, simulating, evolving, and analysing complex regulatory networks
K Wegner, J Knabe, M Robinson, A Egri-Nagy, M Schilstra, C Nehaniv
BMC Systems Biology 1 (1), 1-2, 2007
Transformation semigroups as constructive dynamical spaces
A Egri-Nagy, P Dini, CL Nehaniv, MJ Schilstra
International Conference on Open Philosophies for Associative Autopoietic …, 2010
Sgpdec: Cascade (de) compositions of finite transformation semigroups and permutation groups
A Egri-Nagy, JD Mitchell, CL Nehaniv
International Congress on Mathematical Software, 75-82, 2014
Maximum likelihood estimates of pairwise rearrangement distances
S Serdoz, A Egri-Nagy, J Sumner, BR Holland, PD Jarvis, MM Tanaka, ...
Journal of theoretical biology 423, 31-40, 2017
Computational holonomy decomposition of transformation semigroups
A Egri-Nagy, CL Nehaniv
arXiv preprint arXiv:1508.06345, 2015
Bacterial Genomics and Computational Group Theory: The BioGAP Package for GAP
A Egri-Nagy, AR Francis, V Gebhardt
International Congress on Mathematical Software, 67-74, 2014
SgpDec–software package for hierarchical coordinatization of groups and semigroups, implemented in the GAP computer algebra system
A Egri-Nagy, CL Nehaniv
Version 0.5, 2008
Algebraic double cut and join
S Bhatia, A Egri-Nagy, AR Francis
Journal of mathematical biology 71 (5), 1149-1178, 2015
Cycle structure in automata and the holonomy decomposition
A Egri-Nagy, CL Nehaniv
Acta Cybernetica 17 (2), 199-211, 2005
Algebraic hierarchical decomposition of finite state automata: A computational approach
A Egri-Nagy
University of Hertfordshire, 2005
Enumerating transformation semigroups
J East, A Egri-Nagy, JD Mitchell
Semigroup Forum 95 (1), 109-125, 2017
Exploring the concept of interaction computing through the discrete algebraic analysis of the Belousov–Zhabotinsky reaction
P Dini, CL Nehaniv, A Egri-Nagy, MJ Schilstra
Biosystems 112 (2), 145-162, 2013
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