フォロー
Yuki Naito
Yuki Naito
確認したメール アドレス: tmd.ac.jp
タイトル
引用先
引用先
CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites
Y Naito, K Hino, H Bono, K Ui-Tei
Bioinformatics 31 (7), 1120-1123, 2015
10752015
Guidelines for the selection of highly effective siRNA sequences for mammalian and chick RNA interference
K Ui‐Tei, Y Naito, F Takahashi, T Haraguchi, H Ohki‐Hamazaki, A Juni, ...
Nucleic acids research 32 (3), 936-948, 2004
10732004
siDirect: highly effective, target-specific siRNA design software for mammalian RNA interference
Y Naito, T Yamada, K Ui-Tei, S Morishita, K Saigo
Nucleic acids research 32 (suppl_2), W124-W129, 2004
3552004
Polynucleotides for causing RNA interference and method for inhibiting gene expression using the same
Y Naito, M Fujino, S Oguchi, Y Natori
US Patent App. 11/598,052, 2008
3472008
siDirect 2.0: updated software for designing functional siRNA with reduced seed-dependent off-target effect
Y Naito, J Yoshimura, S Morishita, K Ui-Tei
BMC bioinformatics 10, 1-8, 2009
2292009
Functional dissection of siRNA sequence by systematic DNA substitution: modified siRNA with a DNA seed arm is a powerful tool for mammalian gene silencing with significantly …
K Ui-Tei, Y Naito, S Zenno, K Nishi, K Yamato, F Takahashi, A Juni, ...
Nucleic acids research 36 (7), 2136-2151, 2008
2262008
dsCheck: highly sensitive off-target search software for double-stranded RNA-mediated RNA interference
Y Naito, T Yamada, T Matsumiya, K Ui-Tei, K Saigo, S Morishita
Nucleic acids research 33 (suppl_2), W589-W591, 2005
2072005
Thermodynamic stability and Watson–Crick base pairing in the seed duplex are major determinants of the efficiency of the siRNA-based off-target effect
K Ui-Tei, Y Naito, K Nishi, A Juni, K Saigo
Nucleic acids research 36 (22), 7100-7109, 2008
1942008
CRISPR-Cas3 induces broad and unidirectional genome editing in human cells
H Morisaka, K Yoshimi, Y Okuzaki, P Gee, Y Kunihiro, E Sonpho, H Xu, ...
Nature communications 10 (1), 5302, 2019
1442019
siRNA design software for a target gene-specific RNA interference
Y Naito, K Ui-Tei
Frontiers in genetics 3, 28083, 2012
842012
Polynucleotides for causing RNA interference and method for inhibiting gene expression using the same
Y Naito, M Fujino, S Oguchi, Y Natori
US Patent App. 12/662,904, 2011
682011
Optimal design and validation of antiviral siRNA for targeting HIV-1
Y Naito, K Nohtomi, T Onogi, R Uenishi, K Ui-Tei, K Saigo, Y Takebe
Retrovirology 4, 1-5, 2007
662007
Evaluation of off‐target effects of gapmer antisense oligonucleotides using human cells
T Yoshida, Y Naito, H Yasuhara, K Sasaki, H Kawaji, J Kawai, M Naito, ...
Genes to Cells 24 (12), 827-835, 2019
592019
siVirus: web-based antiviral siRNA design software for highly divergent viral sequences
Y Naito, K Ui-Tei, T Nishikawa, Y Takebe, K Saigo
Nucleic acids research 34 (suppl_2), W448-W450, 2006
582006
Designing functional siRNA with reduced off-target effects
Y Naito, K Ui-Tei
siRNA Design: Methods and Protocols, 57-68, 2013
552013
E-cadherin is transcriptionally activated via suppression of ZEB1 transcriptional repressor by small RNA-mediated gene silencing
M Mazda, K Nishi, Y Naito, K Ui-Tei
PloS one 6 (12), e28688, 2011
472011
Estimated number of off‐target candidate sites for antisense oligonucleotides in human mRNA sequences
T Yoshida, Y Naito, K Sasaki, E Uchida, Y Sato, M Naito, T Kawanishi, ...
Genes to Cells 23 (6), 448-455, 2018
392018
Guidelines for the selection of effective short-interfering RNA sequences for functional genomics
K Ui-Tei, Y Naito, K Saigo
Target Discovery and Validation Reviews and Protocols: Volume 2: Emerging …, 2007
342007
Technical considerations in Hi‐C scaffolding and evaluation of chromosome‐scale genome assemblies
K Yamaguchi, M Kadota, O Nishimura, Y Ohishi, Y Naito, S Kuraku
Molecular Ecology 30 (23), 5923-5934, 2021
242021
Intercontinental dispersal of HIV-1 subtype B associated with transmission among men who have sex with men in Japan
Y Takebe, Y Naito, J Raghwani, E Fearnhill, T Sano, S Kusagawa, ...
Journal of virology 88 (17), 9864-9876, 2014
232014
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