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Jayson Harshbarger
Jayson Harshbarger
Technical Scientist at RIKEN Center for Life Science Technologies
Verified email at gsc.riken.jp
Title
Cited by
Cited by
Year
A promoter-level mammalian expression atlas
Nature 507 (7493), 462-470, 2014
16922014
An atlas of human long non-coding RNAs with accurate 5′ ends
CC Hon, JA Ramilowski, J Harshbarger, N Bertin, OJL Rackham, J Gough, ...
Nature 543 (7644), 199-204, 2017
9972017
Gateways to the FANTOM5 promoter level mammalian expression atlas
M Lizio, J Harshbarger, H Shimoji, J Severin, T Kasukawa, S Sahin, ...
Genome biology 16, 1-14, 2015
8322015
The BioMart community portal: an innovative alternative to large, centralized data repositories
D Smedley, S Haider, S Durinck, L Pandini, P Provero, J Allen, O Arnaiz, ...
Nucleic acids research 43 (W1), W589-W598, 2015
7902015
A draft network of ligand–receptor-mediated multicellular signalling in human
JA Ramilowski, T Goldberg, J Harshbarger, E Kloppmann, M Lizio, ...
Nature communications 6 (1), 7866, 2015
7282015
Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells
E Arner, CO Daub, K Vitting-Seerup, R Andersson, B Lilje, F Drabløs, ...
Science 347 (6225), 1010-1014, 2015
5982015
An integrated expression atlas of miRNAs and their promoters in human and mouse
D De Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G Åström, ...
Nature biotechnology 35 (9), 872-878, 2017
5442017
FANTOM5 CAGE profiles of human and mouse samples
S Noguchi, T Arakawa, S Fukuda, M Furuno, A Hasegawa, F Hori, ...
Scientific data 4 (1), 1-10, 2017
2292017
Interactive visualization and analysis of large-scale sequencing datasets using ZENBU
J Severin, M Lizio, J Harshbarger, N Bertin, ARR Forrest
NATURE BIOTECHNOLOGY, 2014
1762014
Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation
H Morikawa, N Ohkura, A Vandenbon, M Itoh, S Nagao-Sato, H Kawaji, ...
Proceedings of the National Academy of Sciences 111 (14), 5289-5294, 2014
1412014
Functional annotation of human long noncoding RNAs via molecular phenotyping
JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ...
Genome research 30 (7), 1060-1072, 2020
1342020
Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals
M Lizio, J Harshbarger, I Abugessaisa, S Noguchi, A Kondo, J Severin, ...
Nucleic acids research, gkw995, 2016
1042016
FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki
I Abugessaisa, H Shimoji, S Sahin, A Kondo, J Harshbarger, M Lizio, ...
Database 2016, baw105, 2016
812016
FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs
I Abugessaisa, JA Ramilowski, M Lizio, J Severin, A Hasegawa, ...
Nucleic acids research 49 (D1), D892-D898, 2021
672021
FANTOM5 CAGE profiles of human and mouse reprocessed for GRCh38 and GRCm38 genome assemblies
I Abugessaisa, S Noguchi, A Hasegawa, J Harshbarger, A Kondo, M Lizio, ...
Scientific Data 4 (1), 1-10, 2017
642017
DEIVA: a web application for interactive visual analysis of differential gene expression profiles
J Harshbarger, A Kratz, P Carninci
BMC genomics 18, 1-5, 2017
312017
Human genome meeting 2016: houston, TX, USA. 28 February-2 March 2016
AK Srivastava, Y Wang, R Huang, C Skinner, T Thompson, L Pollard, ...
Human genomics 10, 1-40, 2016
172016
Corrigendum: A draft network of ligand-receptor-mediated multicellular signalling in human
JA Ramilowski, T Goldberg, J Harshbarger, E Kloppmann, M Lizio, ...
Nature communications 7, 2016
152016
’t Hoen PA, Tatum Z, Thompson M, Toyoda T, Wright DW, Daub CO, Itoh M, Carninci P, Hayashizaki Y, Forrest AR, Kawaji H. Gateways to the FANTOM5 promoter level mammalian …
M Lizio, J Harshbarger, H Shimoji, J Severin, T Kasukawa, S Sahin, ...
Genome Biol 16, 22, 2015
122015
Monitoring transcription initiation activities in rat and dog
M Lizio, AK Mukarram, M Ohno, S Watanabe, M Itoh, A Hasegawa, ...
Scientific Data 4 (1), 1-13, 2017
72017
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