| Artificial intelligence and cellular segmentation in tissue microscopy images MS Durkee, R Abraham, MR Clark, ML Giger The American journal of pathology 191 (10), 1693-1701, 2021 | 39 | 2021 |
| Specific in situ inflammatory states associate with progression to renal failure in lupus nephritis R Abraham, MS Durkee, J Ai, M Veselits, G Casella, Y Asano, A Chang, ... The Journal of Clinical Investigation 132 (13), 2022 | 29 | 2022 |
| Quantifying the effects of biopsy fixation and staining panel design on automatic instance segmentation of immune cells in human lupus nephritis MS Durkee, R Abraham, J Ai, M Veselits, MR Clark, ML Giger Journal of Biomedical Optics 26 (2), 022910-022910, 2021 | 15 | 2021 |
| Intravital excitation increases detection sensitivity for pulmonary tuberculosis by whole‐body imaging with β‐lactamase reporter enzyme fluorescence F Nooshabadi, HJ Yang, Y Cheng, MS Durkee, H Xie, J Rao, JD Cirillo, ... Journal of biophotonics 10 (6-7), 821-829, 2017 | 14 | 2017 |
| Comparing Mask R-CNN and U-Net architectures for robust automatic segmentation of immune cells in immunofluorescence images of Lupus Nephritis biopsies MS Durkee, R Abraham, J Ai, JD Fuhrman, MR Clark, ML Giger Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues XIX …, 2021 | 12 | 2021 |
| Fabrication and characterization of optical tissue phantoms containing macrostructure MS Durkee, LD Nash, F Nooshabadi, JD Cirillo, DJ Maitland, KC Maitland JoVE (Journal of Visualized Experiments), e57031, 2018 | 11 | 2018 |
| Light scattering by pulmonary alveoli and airway surface liquid using a concentric sphere model MS Durkee, GK Fletcher, C Carlson, K Matheson, SK Swift, DJ Maitland, ... Optics letters 43 (20), 5001-5004, 2018 | 8 | 2018 |
| Improved instance segmentation of immune cells in human lupus nephritis biopsies with Mask R-CNN MS Durkee, A Sibley, J Ai, R Abraham, VM Liarski, MR Clark, ML Giger Medical Imaging 2020: Digital Pathology 11320, 308-315, 2020 | 7 | 2020 |
| Optical model of the murine lung to optimize pulmonary illumination MS Durkee, F Nooshabadi, JD Cirillo, KC Maitland Journal of biomedical optics 23 (7), 071208-071208, 2018 | 7 | 2018 |
| Application and generalizability of U-Net segmentation of immune cells in inflamed tissue R Abraham, MS Durkee, M Veselits, J Ai, JD Fuhrman, MR Clark, ... Medical Imaging 2021: Digital Pathology 11603, 315-322, 2021 | 4 | 2021 |
| Instance segmentation of immune cells in human lupus nephritis using deep learning: comparing performance on sample preparation and staining panels MS Durkee, R Abraham, A Sibley, B Cifu, J Ai, VM Liarski, MR Clark, ... Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues …, 2020 | 4 | 2020 |
| Managing class imbalance and differential staining of immune cell populations in multi-class instance segmentation of multiplexed immunofluorescence images of Lupus Nephritis … MS Durkee, R Abraham, J Ai, MR Clark, ML Giger Medical Imaging 2021: Digital Pathology 11603, 285-293, 2021 | 3 | 2021 |
| Pseudo-spectral angle mapping for automated pixel-level analysis of highly multiplexed tissue image data MS Durkee, J Ai, G Casella, T Cao, A Chang, A Halper-Stromberg, B Jabri, ... bioRxiv, 2024.01. 09.574920, 2024 | 2 | 2024 |
| Convolutional neural networks detect cells in densely packed images at performance levels similar to human readers MS Durkee, N Petrie, K Lleras, J Ai, R Abraham, JC Chittenden, C Kasir, ... Medical Imaging 2023: Image Perception, Observer Performance, and Technology …, 2023 | 2 | 2023 |
| Fluorescence modeling of in vivo optical detection of Mycobacterium tuberculosis MS Durkee, JD Cirillo, KC Maitland Biomedical Optics Express 10 (10), 5445-5460, 2019 | 2 | 2019 |
| Generalizations of the Jaccard index and Sørensen index for assessing agreement across multiple readers in object detection and instance segmentation in biomedical imaging MS Durkee, K Lleras, K Drukker, J Ai, T Cao, G Casella, D Ghosh, ... Journal of Medical Imaging 10 (6), 065503-065503, 2023 | 1 | 2023 |
| Deep learning to detect lymphocytes with high phenotypic resolution in highly multiplexed fluorescence microscopy images of triple-negative breast cancer biopsies MS Durkee, R Abraham, MR Clark, ML Giger Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues XX …, 2022 | 1 | 2022 |
| Application of U-Nets for the automatic segmentation of immune cells in high-dimensional microscopy images of kidney biopsies R Abraham, MS Durkee, M Veselits, J Ai, JD Fuhrman, MR Clark, ... Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues XIX …, 2021 | 1 | 2021 |
| Preliminary radiomic texture analysis of high-channel fluorescence confocal images of triple-negative breast cancer biopsies MS Durkee, BM Ferguson, R Abraham, L Lan, H Li, MR Clark, ML Giger Medical Imaging 2020: Digital Pathology 11320, 258-266, 2020 | 1 | 2020 |
| A fluorescence model of the murine lung for optical detection of pathogenic bacteria MS Durkee, JD Cirillo, KC Maitland European Conference on Biomedical Optics, 104110H, 2017 | 1 | 2017 |
Maryellen GigerUniversity of ChicagoVerified email at uchicago.edu
