| The condensin complex is a mechanochemical motor that translocates along DNA T Terakawa, S Bisht, JM Eeftens, C Dekker, CH Haering, EC Greene Science 358 (6363), 672-676, 2017 | 295 | 2017 |
| Base triplet stepping by the Rad51/RecA family of recombinases JY Lee, T Terakawa, Z Qi, JB Steinfeld, S Redding, YH Kwon, WA Gaines, ... Science 349 (6251), 977-981, 2015 | 173 | 2015 |
| On easy implementation of a variant of the replica exchange with solute tempering in GROMACS T Terakawa, T Kameda, S Takada Journal of computational chemistry 32 (7), 1228-1234, 2011 | 169 | 2011 |
| Energy landscape and multiroute folding of topologically complex proteins adenylate kinase and 2ouf-knot W Li, T Terakawa, W Wang, S Takada Proceedings of the National Academy of Sciences 109 (44), 17789-17794, 2012 | 147 | 2012 |
| Modeling structural dynamics of biomolecular complexes by coarse-grained molecular simulations S Takada, R Kanada, C Tan, T Terakawa, W Li, H Kenzaki Accounts of chemical research 48 (12), 3026-3035, 2015 | 137 | 2015 |
| Multiscale ensemble modeling of intrinsically disordered proteins: p53 N-terminal domain T Terakawa, S Takada Biophysical journal 101 (6), 1450-1458, 2011 | 113 | 2011 |
| p53 searches on DNA by rotation-uncoupled sliding at C-terminal tails and restricted hopping of core domains T Terakawa, H Kenzaki, S Takada Journal of the American Chemical Society 134 (35), 14555-14562, 2012 | 100 | 2012 |
| Dynamic coupling among protein binding, sliding, and DNA bending revealed by molecular dynamics C Tan, T Terakawa, S Takada Journal of the American Chemical Society 138 (27), 8512-8522, 2016 | 63 | 2016 |
| Defining the influence of Rad51 and Dmc1 lineage-specific amino acids on genetic recombination JB Steinfeld, O Beláň, Y Kwon, T Terakawa, A Al-Zain, MJ Smith, ... Genes & development 33 (17-18), 1191-1207, 2019 | 42 | 2019 |
| RESPAC: method to determine partial charges in coarse-grained protein model and its application to DNA-binding proteins T Terakawa, S Takada Journal of Chemical Theory and Computation 10 (2), 711-721, 2014 | 40 | 2014 |
| p53 dynamics upon response element recognition explored by molecular simulations T Terakawa, S Takada Scientific reports 5 (1), 17107, 2015 | 34 | 2015 |
| Multi-scale ensemble modeling of modular proteins with intrinsically disordered linker regions: application to p53 T Terakawa, J Higo, S Takada Biophysical Journal 107 (3), 721-729, 2014 | 29 | 2014 |
| Sequential eviction of crowded nucleoprotein complexes by the exonuclease RecBCD molecular motor T Terakawa, S Redding, TD Silverstein, EC Greene Proceedings of the National Academy of Sciences 114 (31), E6322-E6331, 2017 | 25 | 2017 |
| Nucleosome crowding in chromatin slows the diffusion but can promote target search of proteins R Kanada, T Terakawa, H Kenzaki, S Takada Biophysical Journal 116 (12), 2285-2295, 2019 | 19 | 2019 |
| ALS mutations in the TIA-1 prion-like domain trigger highly condensed pathogenic structures HT Naotaka Sekiyama, Kiyofumi Takaba, Saori Maki-Yonekura, Ken-ichi Akagi ... Proceedings of the National Academy of Sciences, 2022 | 16 | 2022 |
| How one-dimensional diffusion of transcription factors are affected by obstacles: coarse-grained molecular dynamics study M Saito, T Terakawa, S Takada Molecular Simulation 43 (13-16), 1315-1321, 2017 | 8 | 2017 |
| Single-molecule junction spontaneously restored by DNA zipper T Harashima, S Fujii, Y Jono, T Terakawa, N Kurita, S Kaneko, M Kiguchi, ... Nature Communications 12 (1), 5762, 2021 | 6 | 2021 |
| The lane-switch mechanism for nucleosome repositioning by DNA translocase F Nagae, GB Brandani, S Takada, T Terakawa Nucleic Acids Research 49 (16), 9066-9076, 2021 | 5 | 2021 |
| Modeling of DNA binding to the condensin hinge domain using molecular dynamics simulations guided by atomic force microscopy H Koide, N Kodera, S Bisht, S Takada, T Terakawa PLOS Computational Biology 17 (7), e1009265, 2021 | 5 | 2021 |
| Coarse-grained molecular dynamics simulations of base-pair mismatch recognition protein MutS sliding along DNA K Inoue, S Takada, T Terakawa Biophysics and Physicobiology 19, e190015, 2022 | 3 | 2022 |
