John Paul Didion, PhD
John Paul Didion, PhD
Principal Scientist, DNAnexus
Verified email at dnanexus.com - Homepage
Title
Cited by
Cited by
Year
Subspecific origin and haplotype diversity in the laboratory mouse
H Yang, JR Wang, JP Didion, RJ Buus, TA Bell, CE Welsh, F Bonhomme, ...
Nature genetics 43 (7), 648, 2011
3942011
The genome architecture of the Collaborative Cross mouse genetic reference population
Collaborative Cross Consortium
Genetics 190 (2), 389-401, 2012
3672012
Genetic analysis of complex traits in the emerging Collaborative Cross
DL Aylor, W Valdar, W Foulds-Mathes, RJ Buus, RA Verdugo, RS Baric, ...
Genome research 21 (8), 1213-1222, 2011
3282011
Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring
V Lange, JA Malmström, J Didion, NL King, BP Johansson, J Schäfer, ...
Molecular & Cellular Proteomics 7 (8), 1489-1500, 2008
2262008
Coexistent ARID1A–PIK3CA mutations promote ovarian clear-cell tumorigenesis through pro-tumorigenic inflammatory cytokine signalling
RL Chandler, JS Damrauer, JR Raab, JC Schisler, MD Wilkerson, ...
Nature communications 6 (1), 1-14, 2015
2042015
Analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance
JJ Crowley, V Zhabotynsky, W Sun, S Huang, IK Pakatci, Y Kim, JR Wang, ...
Nature genetics 47 (4), 353-360, 2015
1802015
Genetic regulatory signatures underlying islet gene expression and type 2 diabetes
A Varshney, LJ Scott, RP Welch, MR Erdos, PS Chines, N Narisu, ...
Proceedings of the National Academy of Sciences 114 (9), 2301-2306, 2017
1412017
The mouse universal genotyping array: from substrains to subspecies
AP Morgan, CP Fu, CY Kao, CE Welsh, JP Didion, L Yadgary, L Hyacinth, ...
G3: Genes, Genomes, Genetics 6 (2), 263-279, 2016
1162016
Atropos: specific, sensitive, and speedy trimming of sequencing reads
JP Didion, M Martin, FS Collins
PeerJ 5, e3720, 2017
922017
The genetic regulatory signature of type 2 diabetes in human skeletal muscle
LJ Scott, MR Erdos, JR Huyghe, RP Welch, AT Beck, BN Wolford, ...
Nature communications 7 (1), 1-12, 2016
852016
Discovery of novel variants in genotyping arrays improves genotype retention and reduces ascertainment bias
JP Didion, H Yang, K Sheppard, CP Fu, L McMillan, FPM de Villena, ...
BMC genomics 13 (1), 1-18, 2012
742012
A multi-megabase copy number gain causes maternal transmission ratio distortion on mouse chromosome 2
JP Didion, AP Morgan, AMF Clayshulte, RC Mcmullan, L Yadgary, ...
PLoS Genet 11 (2), e1004850, 2015
542015
Deconstructing Mus gemischus: advances in understanding ancestry, structure, and variation in the genome of the laboratory mouse
JP Didion, FPM de Villena
Mammalian genome 24 (1), 1-20, 2013
482013
R2d2 Drives Selfish Sweeps in the House Mouse
JP Didion, AP Morgan, L Yadgary, TA Bell, RC McMullan, ...
Molecular biology and evolution 33 (6), 1381-1395, 2016
432016
SNP array profiling of mouse cell lines identifies their strains of origin and reveals cross-contamination and widespread aneuploidy
JP Didion, RJ Buus, Z Naghashfar, DW Threadgill, HC Morse, ...
BMC genomics 15 (1), 1-12, 2014
362014
Genetic architecture of skewed X inactivation in the laboratory mouse
JD Calaway, AB Lenarcic, JP Didion, JR Wang, JB Searle, L McMillan, ...
PLoS Genet 9 (10), e1003853, 2013
352013
Single-cell ATAC-Seq in human pancreatic islets and deep learning upscaling of rare cells reveals cell-specific type 2 diabetes regulatory signatures
V Rai, DX Quang, MR Erdos, DA Cusanovich, RM Daza, N Narisu, LS Zou, ...
Molecular metabolism 32, 109-121, 2020
342020
Integrative analysis of gene expression, DNA methylation, physiological traits, and genetic variation in human skeletal muscle
DL Taylor, AU Jackson, N Narisu, G Hemani, MR Erdos, PS Chines, ...
Proceedings of the National Academy of Sciences 116 (22), 10883-10888, 2019
332019
BoostMe accurately predicts DNA methylation values in whole-genome bisulfite sequencing of multiple human tissues
LS Zou, MR Erdos, DL Taylor, PS Chines, A Varshney, SCJ Parker, ...
BMC genomics 19 (1), 1-15, 2018
182018
The mouse universal genotyping array: from substrains to subspecies. G3 (Bethesda) 6: 263–279
AP Morgan, CP Fu, CY Kao, CE Welsh, JP Didion, L Yadgary, L Hyacinth, ...
142016
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