Tomoshi Kameda
Tomoshi Kameda
産業技術総合研究所 人工知能研究センター
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On easy implementation of a variant of the replica exchange with solute tempering in GROMACS
T Terakawa, T Kameda, S Takada
Journal of computational chemistry 32 (7), 1228-1234, 2011
Arginine-assisted solubilization system for drug substances: solubility experiment and simulation
A Hirano, T Kameda, T Arakawa, K Shiraki
The Journal of Physical Chemistry B 114 (42), 13455-13462, 2010
NMR characterization of the interactions between lyso-GM1 aqueous micelles and amyloid β
M Yagi-Utsumi, T Kameda, Y Yamaguchi, K Kato
FEBS letters 584 (4), 831-836, 2010
Comprehensive prediction of lncRNA–RNA interactions in human transcriptome
G Terai, J Iwakiri, T Kameda, M Hamada, K Asai
BMC genomics 17 (1), 153-164, 2016
Machine-learning-guided mutagenesis for directed evolution of fluorescent proteins
Y Saito, M Oikawa, H Nakazawa, T Niide, T Kameda, K Tsuda, M Umetsu
ACS synthetic biology 7 (9), 2014-2022, 2018
Lanthanide-assisted NMR evaluation of a dynamic ensemble of oligosaccharide conformations
S Yamamoto, Y Zhang, T Yamaguchi, T Kameda, K Kato
Chemical Communications 48 (39), 4752-4754, 2012
Interaction of arginine with Capto MMC in multimodal chromatography
A Hirano, T Arakawa, T Kameda
Journal of Chromatography A 1338, 58-66, 2014
Molecular dynamics simulation of the arginine-assisted solubilization of caffeic acid: intervention in the interaction
A Hirano, T Kameda, D Shinozaki, T Arakawa, K Shiraki
The Journal of Physical Chemistry B 117 (25), 7518-7527, 2013
Paddling mechanism for the substrate translocation by AAA+ motor revealed by multiscale molecular simulations
N Koga, T Kameda, K Okazaki, S Takada
Proceedings of the National Academy of Sciences 106 (43), 18237-18242, 2009
Secondary structure provides a template for the folding of nearby polypeptides
T Kameda, S Takada
Proceedings of the National Academy of Sciences 103 (47), 17765-17770, 2006
Arginine Side Chains as a Dispersant for Individual Single‐Wall Carbon Nanotubes
A Hirano, T Tanaka, H Kataura, T Kameda
Chemistry–A European Journal 20 (17), 4922-4930, 2014
Solution Structure of the Q41N Variant of Ubiquitin as a Model for the Alternatively Folded N2 State of Ubiquitin
S Kitazawa, T Kameda, M Yagi-Utsumi, K Sugase, NJ Baxter, K Kato, ...
Biochemistry 52 (11), 1874-1885, 2013
Multiscale methods for protein folding simulations
W Li, H Yoshii, N Hori, T Kameda, S Takada
Methods 52 (1), 106-114, 2010
A covalent G-site inhibitor for glutathione S-transferase Pi (GSTP 1-1)
Y Shishido, F Tomoike, Y Kimura, K Kuwata, T Yano, K Fukui, H Fujikawa, ...
Chemical Communications 53 (81), 11138-11141, 2017
Effects of multivalency and hydrophobicity of polyamines on enzyme hyperactivation of α-chymotrypsin
T Kurinomaru, T Kameda, K Shiraki
Journal of Molecular Catalysis B: Enzymatic 115, 135-139, 2015
Investigation of the noncovalent binding mode of covalent proteasome inhibitors around the transition state by combined use of cyclopropylic strain-based conformational …
S Kawamura, Y Unno, M Tanaka, T Sasaki, A Yamano, T Hirokawa, ...
Journal of medicinal chemistry 56 (14), 5829-5842, 2013
Mechanism of protein desorption from 4-mercaptoethylpyridine resins by arginine solutions
A Hirano, T Maruyama, K Shiraki, T Arakawa, T Kameda
Journal of Chromatography A 1373, 141-148, 2014
Improved accuracy in rna–protein rigid body docking by incorporating force field for molecular dynamics simulation into the scoring function
J Iwakiri, M Hamada, K Asai, T Kameda
Journal of chemical theory and computation 12 (9), 4688-4697, 2016
Detecting O 2 binding sites in protein cavities
R Kitahara, Y Yoshimura, M Xue, T Kameda, FAA Mulder
Scientific reports 6 (1), 1-12, 2016
Structure determination of uniformly 13C, 15N labeled protein using qualitative distance restraints from MAS solid-state 13C-NMR observed paramagnetic …
H Tamaki, A Egawa, K Kido, T Kameda, M Kamiya, T Kikukawa, T Aizawa, ...
Journal of biomolecular NMR 64 (1), 87-101, 2016
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