Yang Ruan
Yang Ruan
PhD of Computer Science, Indiana University
Verified email at indiana.edu
Title
Cited by
Cited by
Year
Hybrid cloud and cluster computing paradigms for life science applications
J Qiu, J Ekanayake, T Gunarathne, JY Choi, SH Bae, H Li, B Zhang, ...
BMC bioinformatics 11 (12), 1-6, 2010
962010
Improving resource utilization in mapreduce
Z Guo, G Fox, M Zhou, Y Ruan
2012 IEEE International Conference on Cluster Computing, 402-410, 2012
542012
Applying twister to scientific applications
B Zhang, Y Ruan, TL Wu, J Qiu, A Hughes, G Fox
2010 IEEE Second International Conference on Cloud Computing Technology and …, 2010
512010
Harp: Collective communication on hadoop
B Zhang, Y Ruan, J Qiu
2015 IEEE International Conference on Cloud Engineering, 228-233, 2015
432015
DACIDR: deterministic annealed clustering with interpolative dimension reduction using a large collection of 16S rRNA sequences
Y Ruan, S Ekanayake, M Rho, H Tang, SH Bae, J Qiu, G Fox
Proceedings of the ACM Conference on Bioinformatics, Computational Biology …, 2012
282012
Data intensive computing for bioinformatics
J Qiu, J Ekanayake, T Gunarathne, JY Choi, SH Bae, Y Ruan, ...
Data Intensive Distributed Computing: Challenges and Solutions for Large …, 2012
242012
Phylogenetically structured differences in rRNA gene sequence variation among species of arbuscular mycorrhizal fungi and their implications for sequence clustering
GL House, S Ekanayake, Y Ruan, UME Schütte, W Kaonongbua, G Fox, ...
Applied and environmental microbiology 82 (16), 4921-4930, 2016
222016
Integration of clustering and multidimensional scaling to determine phylogenetic trees as spherical phylograms visualized in 3 dimensions
Y Ruan, GL House, S Ekanayake, U Schütte, JD Bever, H Tang, G Fox
2014 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid …, 2014
222014
A robust and scalable solution for interpolative multidimensional scaling with weighting
Y Ruan, G Fox
2013 IEEE 9th International Conference on e-Science, 61-69, 2013
192013
Applicability of DryadLINQ to scientific applications
J Ekanayake, T Gunarathne, J Qiu, G Fox, S Beason, JY Choi, Y Ruan, ...
Community Grids Laboratory, Indiana University, 2009
182009
Visualizing the protein sequence universe
L Stanberry, R Higdon, W Haynes, N Kolker, W Broomall, S Ekanayake, ...
Proceedings of the 3rd international workshop on Emerging computational …, 2012
152012
Hymr: a hybrid mapreduce workflow system
Y Ruan, Z Guo, Y Zhou, J Qiu, G Fox
Proceedings of the 3rd international workshop on Emerging computational …, 2012
122012
Design patterns for scientific applications in DryadLINQ CTP
H Li, Y Ruan, Y Zhou, J Qiu, G Fox
Proceedings of the second international workshop on Data intensive computing …, 2011
112011
Interpolative multidimensional scaling techniques for the identification of clusters in very large sequence sets
A Hughes, Y Ruan, S Ekanayake, SH Bae, Q Dong, M Rho, J Qiu, G Fox
BMC bioinformatics 13 (2), 1-6, 2012
102012
Map-reduce expansion of the ISGA genomic analysis web server
C Hemmerich, A Hughes, Y Ruan, A Buechlein, J Qiu, G Fox
IEEE CloudCom, 2010
42010
Design Patterns for Scientific Applications in DryadLINQ CTP, to appear
H Li, Y Ruan, Y Zhou, J Qiu, G Fox
in Proceedings of The Second International Workshop on Data Intensive …, 2011
32011
Salsa project: Parallel data mining of gis, web, medical, physics, chemical, and biology data
X Qiu, G Fox, SH Bae, JY Choi, J Ekanayake, Y Ruan
2008 IEEE Fourth International Conference on eScience, 335-336, 2008
22008
Scalable and robust clustering and visualization for large-scale bioinformatics data
Y Ruan
Indiana University, 2014
2014
DRYADLINQ CTP EVALUATION
CTP DryadLINQ
2011
SCALABLE AND ROBUST DIMENSION REDUCTION AND CLUSTERING
Y Ruan
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Articles 1–20