| Inflammation in gastric cancer: Interplay of the COX‐2/prostaglandin E2 and Toll‐like receptor/MyD88 pathways K Echizen, O Hirose, Y Maeda, M Oshima Cancer science 107 (4), 391-397, 2016 | 227 | 2016 |
| A Bayesian formulation of coherent point drift O Hirose IEEE Transactions on Pattern Analysis and Machine Intelligence 43 (7), 2269-2286, 2020 | 122 | 2020 |
| Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models O Hirose, R Yoshida, S Imoto, R Yamaguchi, T Higuchi, ... Bioinformatics 24 (7), 932-942, 2008 | 113 | 2008 |
| Accurate automatic detection of densely distributed cell nuclei in 3D space Y Toyoshima, T Tokunaga, O Hirose, M Kanamori, T Teramoto, MS Jang, ... PLoS computational biology 12 (6), e1004970, 2016 | 59 | 2016 |
| The RB–IL-6 axis controls self-renewal and endocrine therapy resistance by fine-tuning mitochondrial activity S Kitajima, A Yoshida, S Kohno, F Li, S Suzuki, N Nagatani, Y Nishimoto, ... Oncogene 36 (36), 5145-5157, 2017 | 53 | 2017 |
| TIGAR: transcript isoform abundance estimation method with gapped alignment of RNA-Seq data by variational Bayesian inference N Nariai, O Hirose, K Kojima, M Nagasaki Bioinformatics 29 (18), 2292-2299, 2013 | 45 | 2013 |
| Acceleration of non-rigid point set registration with downsampling and Gaussian process regression O Hirose IEEE Transactions on Pattern Analysis and Machine Intelligence 43 (8), 2858-2865, 2020 | 32 | 2020 |
| Myeloid Differentiation Factor 88 Signaling in Bone Marrow–Derived Cells Promotes Gastric Tumorigenesis by Generation of Inflammatory Microenvironment Y Maeda, K Echizen, H Oshima, L Yu, N Sakulsak, O Hirose, Y Yamada, ... Cancer Prevention Research 9 (3), 253-263, 2016 | 31* | 2016 |
| Automated detection and tracking of many cells by using 4D live-cell imaging data T Tokunaga, O Hirose, S Kawaguchi, Y Toyoshima, T Teramoto, H Ikebata, ... Bioinformatics 30 (12), i43-i51, 2014 | 29 | 2014 |
| SPF-CellTracker: Tracking multiple cells with strongly-correlated moves using a spatial particle filter O Hirose, S Kawaguchi, T Tokunaga, Y Toyoshima, T Teramoto, S Kuge, ... IEEE/ACM transactions on computational biology and bioinformatics 15 (6 …, 2017 | 28 | 2017 |
| SPY: A novel resampling method for improving classification performance in imbalanced data XT Dang, DH Tran, O Hirose, K Satou 2015 seventh international conference on knowledge and systems engineering …, 2015 | 27 | 2015 |
| PAAQD: Predicting immunogenicity of MHC class I binding peptides using amino acid pairwise contact potentials and quantum topological molecular similarity descriptors T Saethang, O Hirose, I Kimkong, VA Tran, XT Dang, LAT Nguyen, TKT Le, ... Journal of immunological methods 387 (1-2), 293-302, 2013 | 26 | 2013 |
| Prediction of carbohydrate-binding proteins from sequences using support vector machines S Someya, M Kakuta, M Morita, K Sumikoshi, W Cao, Z Ge, O Hirose, ... Advances in bioinformatics 2010, 2010 | 18 | 2010 |
| MicroRNA-140 mediates RB tumor suppressor function to control stem cell-like activity through interleukin-6 A Yoshida, S Kitajima, F Li, C Cheng, Y Takegami, S Kohno, YS Wan, ... Oncotarget 8 (8), 13872, 2017 | 17 | 2017 |
| Estimating gene networks from expression data and binding location data via Boolean networks O Hirose, N Nariai, Y Tamada, H Bannai, S Imoto, S Miyano Computational Science and Its Applications–ICCSA 2005: International …, 2005 | 14 | 2005 |
| EpicCapo: epitope prediction using combined information of amino acid pairwise contact potentials and HLA-peptide contact site information T Saethang, O Hirose, I Kimkong, VA Tran, XT Dang, LAT Nguyen, TKT Le, ... BMC bioinformatics 13, 1-12, 2012 | 13 | 2012 |
| A novel over-sampling method and its application to cancer classification from gene expression data XT Dang, O Hirose, DH Bui, T Saethang, VA Tran, LAT Nguyen, TKT Le, ... Chem-Bio Informatics Journal 13, 19-29, 2013 | 11 | 2013 |
| A novel over-sampling method and its application to miRNA prediction XT Dang, O Hirose, T Saethang, VA Tran, LAT Nguyen, TKT Le, M Kubo, ... Journal of Biomedical Science and Engineering 6 (02), 236, 2013 | 10 | 2013 |
| SiGN-SSM: open source parallel software for estimating gene networks with state space models Y Tamada, R Yamaguchi, S Imoto, O Hirose, R Yoshida, M Nagasaki, ... Bioinformatics 27 (8), 1172-1173, 2011 | 10 | 2011 |
| Geodesic-Based Bayesian Coherent Point Drift O Hirose IEEE Transactions on Pattern Analysis and Machine Intelligence 45 (5), 5816 …, 2022 | 9 | 2022 |
