Julius B. Lucks

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Adam Paul ArkinDepartment of Bioengineering, University of California, Berkeley, Physical Biosciences Division, E.OVerified email at lbl.gov
Kyle E. WattersPrincipal Scientist, Arbor BiotechnologiesVerified email at arbor.bio
James ChappellAssistant Professor, Rice UniversityVerified email at rice.edu
Melissa K TakahashiAssistant Professor, California State University NorthridgeVerified email at csun.edu
Eric StrobelThe State University of New York at BuffaloVerified email at buffalo.edu
Angela M YuUniversity of WashingtonVerified email at uw.edu
Matthew VerosloffGrad Student NorthwesternVerified email at u.northwestern.edu
Michael C. JewettNorthwestern UniversityVerified email at northwestern.edu
Lei Stanley QiAssociate Professor, Stanford UniversityVerified email at stanford.edu
Khalid K. AlamStemloop, Inc.Verified email at stemloop.com
Paul David CarlsonSherlock Biosciences, Cornell University (PhD)Verified email at sherlock.bio
Sharon AviranAssociate Professor at UC DavisVerified email at ucdavis.edu
Vivek K MutalikStaff Scientist, Lawrence Berkeley National Lab, Berkeley CA, USAVerified email at lbl.gov
Adam SilvermanNorthwestern UniversityVerified email at u.northwestern.edu
Lior PachterBren Professor of Computational Biology, CaltechVerified email at caltech.edu
Jaeyoung Kirsten JungNorthwestern UniversityVerified email at u.northwestern.edu
Cole TrapnellAssistant Professor, University of WashingtonVerified email at uw.edu
Alexandra WestbrookPostdoctoral Scholar, University of California, San FranciscoVerified email at cornell.edu
Vincent NoireauxUniversity of MinnesotaVerified email at umn.edu
Walter ThavarajahNorthwestern UniversityVerified email at u.northwestern.edu

Julius B. Lucks

Professor, Northwestern University

Verified email at northwestern.edu - Homepage

Synthetic Biology RNA Structure Cotranscriptional Folding Synthetic Biology Diagnostics


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Multiplexed RNA structure characterization with selective 2′-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq) JB Lucks, SA Mortimer, C Trapnell, S Luo, S Aviran, GP Schroth, ... Proceedings of the National Academy of Sciences 108 (27), 11063-11068, 2011	420	2011
Versatile RNA-sensing transcriptional regulators for engineering genetic networks JB Lucks, L Qi, VK Mutalik, D Wang, AP Arkin Proceedings of the National Academy of Sciences 108 (21), 8617-8622, 2011	261	2011
Creating small transcription activating RNAs J Chappell, MK Takahashi, JB Lucks Nature chemical biology 11 (3), 214-220, 2015	213	2015
Rationally designed families of orthogonal RNA regulators of translation VK Mutalik, L Qi, JC Guimaraes, JB Lucks, AP Arkin Nature chemical biology 8 (5), 447-454, 2012	192	2012
Rapidly characterizing the fast dynamics of RNA genetic circuitry with cell-free transcription–translation (TX-TL) systems MK Takahashi, J Chappell, CA Hayes, ZZ Sun, J Kim, V Singhal, ... ACS synthetic biology 4 (5), 503-515, 2015	155	2015
A renaissance in RNA synthetic biology: new mechanisms, applications and tools for the future J Chappell, KE Watters, MK Takahashi, JB Lucks Current opinion in chemical biology 28, 47-56, 2015	150	2015
Crystallography on curved surfaces V Vitelli, JB Lucks, DR Nelson Proceedings of the National Academy of Sciences 103 (33), 12323-12328, 2006	148	2006
Why on earth?: Evaluating hypotheses about the physiological functions of human geophagy SL Young, PW Sherman, JB Lucks, GH Pelto The Quarterly review of biology 86 (2), 97-120, 2011	134	2011
Cell-free biosensors for rapid detection of water contaminants JK Jung, KK Alam, MS Verosloff, DA Capdevila, M Desmau, PR Clauer, ... Nature biotechnology 38 (12), 1451-1459, 2020	133*	2020
SHAPE-Seq 2.0: systematic optimization and extension of high-throughput chemical probing of RNA secondary structure with next generation sequencing D Loughrey, KE Watters, AH Settle, JB Lucks Nucleic acids research 42 (21), e165-e165, 2014	132	2014
Toward scalable parts families for predictable design of biological circuits JB Lucks, L Qi, WR Whitaker, AP Arkin Current opinion in microbiology 11 (6), 567-573, 2008	129	2008
Computational design of small transcription activating RNAs for versatile and dynamic gene regulation J Chappell, A Westbrook, M Verosloff, JB Lucks Nature communications 8 (1), 1-12, 2017	126	2017
Cotranscriptional folding of a riboswitch at nucleotide resolution KE Watters, EJ Strobel, AM Yu, JT Lis, JB Lucks Nature structural & molecular biology 23 (12), 1124-1131, 2016	125	2016
Modeling and automation of sequencing-based characterization of RNA structure S Aviran, C Trapnell, JB Lucks, SA Mortimer, S Luo, GP Schroth, ... Proceedings of the National Academy of Sciences 108 (27), 11069-11074, 2011	124	2011
Characterizing and prototyping genetic networks with cell-free transcription–translation reactions MK Takahashi, CA Hayes, J Chappell, ZZ Sun, RM Murray, V Noireaux, ... Methods 86, 60-72, 2015	119	2015
High-throughput determination of RNA structures EJ Strobel, AM Yu, JB Lucks Nature Reviews Genetics 19 (10), 615-634, 2018	112	2018
An RNA Mapping DataBase for curating RNA structure mapping experiments P Cordero, JB Lucks, R Das Bioinformatics 28 (22), 3006-3008, 2012	101	2012
Engineering naturally occurring trans -acting non-coding RNAs to sense molecular signals L Qi, JB Lucks, CC Liu, VK Mutalik, AP Arkin Nucleic acids research 40 (12), 5775-5786, 2012	90	2012
A modular strategy for engineering orthogonal chimeric RNA transcription regulators MK Takahashi, JB Lucks Nucleic acids research 41 (15), 7577-7588, 2013	87	2013
Simultaneous characterization of cellular RNA structure and function with in-cell SHAPE-Seq KE Watters, TR Abbott, JB Lucks Nucleic acids research 44 (2), e12-e12, 2016	84	2016

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