フォロー
Soya SHINKAI
Soya SHINKAI
RIKEN Center for Biosystems Dynamics Research (BDR)
確認したメール アドレス: riken.jp - ホームページ
タイトル
引用先
引用先
Dynamic nucleosome movement provides structural information of topological chromatin domains in living human cells
S Shinkai, T Nozaki, K Maeshima, Y Togashi
PLoS computational biology 12 (10), e1005136, 2016
1062016
Condensed but liquid-like domain organization of active chromatin regions in living human cells
T Nozaki, S Shinkai, S Ide, K Higashi, S Tamura, MA Shimazoe, ...
Science Advances 9 (14), eadf1488, 2023
542023
PHi-C: deciphering Hi-C data into polymer dynamics
S Shinkai, M Nakagawa, T Sugawara, Y Togashi, H Ochiai, R Nakato, ...
NAR genomics and bioinformatics 2 (2), lqaa020, 2020
422020
Single-nucleosome imaging reveals steady-state motion of interphase chromatin in living human cells
S Iida, S Shinkai, Y Itoh, S Tamura, MT Kanemaki, S Onami, K Maeshima
Science Advances 8 (22), eabn5626, 2022
332022
Distributional Behavior of Time Averages of Non- Observables in One-dimensional Intermittent Maps with Infinite Invariant Measures
T Akimoto, S Shinkai, Y Aizawa
Journal of Statistical Physics 158, 476-493, 2015
242015
Centromere/kinetochore is assembled through CENP-C oligomerization
M Hara, M Ariyoshi, T Sano, RS Nozawa, S Shinkai, S Onami, I Jansen, ...
Molecular cell 83 (13), 2188-2205. e13, 2023
212023
The Lempel-Ziv complexity of non-stationary chaos in infinite ergodic cases
S Shinkai, Y Aizawa
Progress of theoretical physics 116 (3), 503-515, 2006
212006
Microrheology for Hi-C data reveals the spectrum of the dynamic 3D genome organization
S Shinkai, T Sugawara, H Miura, I Hiratani, S Onami
Biophysical Journal 118 (9), 2220-2228, 2020
172020
PHi-C2: interpreting Hi-C data as the dynamic 3D genome state
S Shinkai, H Itoga, K Kyoda, S Onami
Bioinformatics 38 (21), 4984-4986, 2022
102022
Toward understanding the dynamic state of 3D genome
S Shinkai, S Onami, R Nakato
Computational and Structural Biotechnology Journal 18, 2259-2269, 2020
92020
Generalized Lyapunov exponent as a unified characterization of dynamical instabilities
T Akimoto, M Nakagawa, S Shinkai, Y Aizawa
Physical Review E 91 (1), 012926, 2015
92015
Energetics of single active diffusion trajectories
S Shinkai, Y Togashi
Europhysics Letters 105 (3), 30002, 2014
92014
Spindle pole body movement is affected by glucose and ammonium chloride in fission yeast
H Ito, T Sugawara, S Shinkai, S Mizukawa, A Kondo, H Senda, K Sawai, ...
Biochemical and biophysical research communications 511 (4), 820-825, 2019
72019
Single-nucleosome imaging reveals steady-state motion of interphase chromatin in living human cells. Sci. Adv. 8, eabn5626
S Iida, S Shinkai, Y Itoh, S Tamura, MT Kanemaki, S Onami, K Maeshima
62022
1/f Spectrum and 1-Stable Law in One-Dimensional Intermittent Map with Uniform Invariant Measure and Nekhoroshev Stability
S Shinkai, Y Aizawa
Journal of the Physical Society of Japan 81 (2), 024009, 2012
62012
Transcription-coupled changes in higher-order genomic structure and transcription hub viscosity prolong enhancer-promoter connectivity
H Ohishi, S Shinkai, H Owada, T Fujii, K Hosoda, S Onami, T Yamamoto, ...
bioRxiv, 2023.11. 27.568629, 2023
52023
Bridging the dynamics and organization of chromatin domains by mathematical modeling
S Shinkai, T Nozaki, K Maeshima, Y Togashi
Nucleus 8 (4), 353-359, 2017
52017
Single‐molecule tracking of Nanog and Oct4 in living mouse embryonic stem cells uncovers a feedback mechanism of pluripotency maintenance
K Okamoto, H Fujita, Y Okada, S Shinkai, S Onami, K Abe, K Fujimoto, ...
The EMBO Journal 42 (18), e112305, 2023
22023
Ergodic properties of the Log‐Weibull map with an infinite measure
S Shinkai, Y Aizawa
AIP Conference Proceedings 1076 (1), 219-222, 2008
22008
Spatial organization of supercoil dynamics during DNA replication
Y Kusano, S Shinkai, RS Nozawa, J Sun, S Onami, S Tashiro, T Hirota
bioRxiv, 2024.10. 14.618193, 2024
12024
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論文 1–20