Soya SHINKAI

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Shuichi OnamiRIKEN Center for Biosystems Dynamics ResearchVerified email at riken.jp
Yuichi TOGASHIProfessor, College of Life Sciences, Ritsumeikan UniversityVerified email at fc.ritsumei.ac.jp
Kazuhiro MaeshimaProfessor, National Institute of Genetics and SOKENDAI (The Graduate University for Advanced StudiesVerified email at nig.ac.jp
Tadasu NozakiPostdoctoral fellow, Harvard UniversityVerified email at fas.harvard.edu
Takuma AkimotoProfessor, Tokyo University of ScienceVerified email at rs.tus.ac.jp
Shiori IidaNational Institute of Genetics / SOKENDAI (The Graduate University for Advanced Studies)Verified email at nig.ac.jp
Ryuichiro NakatoAssociate Professor, Institute for Quantitative Biosciences, the University of Tokyo, JapanVerified email at iqb.u-tokyo.ac.jp
Hiroshi OchiaiKyushu UniversityVerified email at bioreg.kyushu-u.ac.jp
Masaki NakagawaFukuoka Institute of TechnologyVerified email at fit.ac.jp
Masato KanemakiProfessor, National Institute of GeneticsVerified email at nig.ac.jp
Yuji ItohTohoku University, Institute of Multidisciplinary Research for Advanced MaterialsVerified email at tohoku.ac.jp
Ichiro HirataniTeam Leader, RIKEN Center for Biosystems Dynamics ResearchVerified email at riken.jp
Satoshi Yoshida早稲田大学Verified email at waseda.jp
Shin-ichi TateDepartment of Mathematical and Life Sciences, Hiroshima UniversityVerified email at hiroshima-u.ac.jp
Hiromi ImamuraGraduate School of Biostudies, Kyoto UniversityVerified email at kyoto-u.ac.jp
Masaru UenoHiroshima UniversityVerified email at hiroshima-u.ac.jp
Hiroya ITOGATechnical Scientist, RIKEN Center for Biosystems Dynamics ResearchVerified email at riken.jp
Koji KyodaRIKEN Center for Biosystems Dynamics ResearchVerified email at riken.jp

Soya SHINKAI

RIKEN Center for Biosystems Dynamics Research (BDR)

Verified email at riken.jp - Homepage

Biophysics Physical Biology Genome Organization Statistical Physics Nonlinear Science


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Dynamic nucleosome movement provides structural information of topological chromatin domains in living human cells S Shinkai, T Nozaki, K Maeshima, Y Togashi PLoS computational biology 12 (10), e1005136, 2016	99	2016
PHi-C: deciphering Hi-C data into polymer dynamics S Shinkai, M Nakagawa, T Sugawara, Y Togashi, H Ochiai, R Nakato, ... NAR genomics and bioinformatics 2 (2), lqaa020, 2020	33	2020
Condensed but liquid-like domain organization of active chromatin regions in living human cells T Nozaki, S Shinkai, S Ide, K Higashi, S Tamura, MA Shimazoe, ... Science Advances 9 (14), eadf1488, 2023	31	2023
Single-nucleosome imaging reveals steady-state motion of interphase chromatin in living human cells S Iida, S Shinkai, Y Itoh, S Tamura, MT Kanemaki, S Onami, K Maeshima Science Advances 8 (22), eabn5626, 2022	24	2022
Distributional Behavior of Time Averages of Non- Observables in One-dimensional Intermittent Maps with Infinite Invariant Measures T Akimoto, S Shinkai, Y Aizawa Journal of Statistical Physics 158, 476-493, 2015	24	2015
The Lempel-Ziv complexity of non-stationary chaos in infinite ergodic cases S Shinkai, Y Aizawa Progress of theoretical physics 116 (3), 503-515, 2006	21	2006
Microrheology for Hi-C data reveals the spectrum of the dynamic 3D genome organization S Shinkai, T Sugawara, H Miura, I Hiratani, S Onami Biophysical Journal 118 (9), 2220-2228, 2020	14	2020
Generalized Lyapunov exponent as a unified characterization of dynamical instabilities T Akimoto, M Nakagawa, S Shinkai, Y Aizawa Physical Review E 91 (1), 012926, 2015	9	2015
Energetics of single active diffusion trajectories S Shinkai, Y Togashi Europhysics Letters 105 (3), 30002, 2014	9	2014
Centromere/kinetochore is assembled through CENP-C oligomerization M Hara, M Ariyoshi, T Sano, RS Nozawa, S Shinkai, S Onami, I Jansen, ... Molecular Cell 83 (13), 2188-2205. e13, 2023	7	2023
Spindle pole body movement is affected by glucose and ammonium chloride in fission yeast H Ito, T Sugawara, S Shinkai, S Mizukawa, A Kondo, H Senda, K Sawai, ... Biochemical and biophysical research communications 511 (4), 820-825, 2019	6	2019
1/f Spectrum and 1-Stable Law in One-Dimensional Intermittent Map with Uniform Invariant Measure and Nekhoroshev Stability S Shinkai, Y Aizawa Journal of the Physical Society of Japan 81 (2), 024009, 2012	6	2012
Toward understanding the dynamic state of 3D genome S Shinkai, S Onami, R Nakato Computational and Structural Biotechnology Journal 18, 2259-2269, 2020	5	2020
Bridging the dynamics and organization of chromatin domains by mathematical modeling S Shinkai, T Nozaki, K Maeshima, Y Togashi Nucleus 8 (4), 353-359, 2017	5	2017
PHi-C2: interpreting Hi-C data as the dynamic 3D genome state S Shinkai, H Itoga, K Kyoda, S Onami Bioinformatics 38 (21), 4984-4986, 2022	3	2022
Ergodic properties of the Log‐Weibull map with an infinite measure S Shinkai, Y Aizawa AIP Conference Proceedings 1076 (1), 219-222, 2008	2	2008
Transcription-coupled changes in higher-order genomic structure and transcription hub viscosity prolong enhancer-promoter connectivity H Ohishi, S Shinkai, H Owada, T Fujii, K Hosoda, S Onami, T Yamamoto, ... bioRxiv, 2023.11. 27.568629, 2023	1	2023
Dissipative Heat Decomposition in Stochastic Energetics: Implication of the Instantaneous Diffusion Coefficient in Nonequilibrium Steady States S Shinkai Journal of the Physical Society of Japan 84 (1), 015001, 2015	1	2015
The lempel-ziv complexity in infinite ergodic systems S Shinkai, Y Aizawa JOURNAL-KOREAN PHYSICAL SOCIETY 50 (1), 261, 2007	1	2007
The Lempel-Ziv complexity of 1/f spectral chaos and the infinite ergodic theory S Shinkai, Y Aizawa Journal of Physics: Conference Series 31 (1), 213, 2006	1	2006

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