An atlas of combinatorial transcriptional regulation in mouse and man T Ravasi, H Suzuki, CV Cannistraci Cell 140 (5), 744-752, 2010 | 848 | 2010 |
A simple algorithm for identifying abbreviation definitions in biomedical text AS Schwartz, MA Hearst Pacific Symposium on Biocomputing, 451-62, 2003 | 757 | 2003 |
Domestication and divergence of Saccharomyces cerevisiae beer yeasts B Gallone, J Steensels, T Prahl, L Soriaga, V Saels, B Herrera-Malaver, ... Cell 166 (6), 1397-1410. e16, 2016 | 706 | 2016 |
Lipid production in Nannochloropsis gaditana is doubled by decreasing expression of a single transcriptional regulator I Ajjawi, J Verruto, M Aqui, LB Soriaga, J Coppersmith, K Kwok, L Peach, ... Nature biotechnology 35 (7), 647-652, 2017 | 445 | 2017 |
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line Nature genetics 41 (5), 553-562, 2009 | 420 | 2009 |
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome EH Margulies, GM Cooper, G Asimenos, DJ Thomas, CN Dewey, A Siepel, ... Genome research 17 (6), 760-774, 2007 | 252 | 2007 |
An improved pig reference genome sequence to enable pig genetics and genomics research A Warr, N Affara, B Aken, H Beiki, DM Bickhart, K Billis, W Chow, L Eory, ... Gigascience 9 (6), giaa051, 2020 | 238 | 2020 |
Metagenomes from high-temperature chemotrophic systems reveal geochemical controls on microbial community structure and function WP Inskeep, DB Rusch, ZJ Jay, MJ Herrgard, MA Kozubal, ... PloS one 5 (3), e9773, 2010 | 231 | 2010 |
Citances: Citation sentences for semantic analysis of bioscience text PI Nakov, AS Schwartz, M Hearst Proceedings of the SIGIR 4, 81-88, 2004 | 213 | 2004 |
Phylogenetic distribution of CRISPR-Cas systems in antibiotic-resistant Pseudomonas aeruginosa A van Belkum, LB Soriaga, MC LaFave, S Akella, JB Veyrieras, EM Barbu, ... MBio 6 (6), 10.1128/mbio. 01796-15, 2015 | 207 | 2015 |
Cost-effective strategies for completing the interactome AS Schwartz, J Yu, KR Gardenour, RL Finley Jr, T Ideker Nature methods 6 (1), 55-61, 2009 | 126 | 2009 |
Multiple alignment by sequence annealing A S. Schwartz, L Pachter Bioinformatics 23 (2), e24-e29, 2007 | 124 | 2007 |
Endophytic fungus and uses therefor WA Green, MJ Herrgard, JS Kerovuo, D Lomelin, EJ Mathur, ... US Patent App. 12/753,760, 2011 | 83 | 2011 |
Sequence analysis of a complete 1.66 Mb Prochlorococcus marinus MED4 genome cloned in yeast C Tagwerker, CL Dupont, BJ Karas, L Ma, RY Chuang, GA Benders, ... Nucleic acids research 40 (20), 10375-10383, 2012 | 65 | 2012 |
Azotobacter Genomes: The Genome of Azotobacter chroococcum NCIMB 8003 (ATCC 4412) RL Robson, R Jones, RM Robson, A Schwartz, TH Richardson PLoS One 10 (6), e0127997, 2015 | 56 | 2015 |
BioText Team report for the TREC 2003 Genomics Track. G Bhalotia, P Nakov, AS Schwartz, MA Hearst TREC, 612-621, 2003 | 43 | 2003 |
Antibody optimization enabled by artificial intelligence predictions of binding affinity and naturalness S Bachas, G Rakocevic, D Spencer, AV Sastry, R Haile, JM Sutton, ... BioRxiv, 2022.08. 16.504181, 2022 | 41 | 2022 |
Tools for loading MEDLINE into a local relational database DE Oliver, G Bhalotia, AS Schwartz, RB Altman, MA Hearst BMC bioinformatics 5, 1-12, 2004 | 41 | 2004 |
Alignment metric accuracy AS Schwartz, EW Myers, L Pachter arXiv preprint q-bio/0510052, 2005 | 35 | 2005 |
Next-generation sequencing of Haematococcus lacustris reveals an extremely large 1.35-megabase chloroplast genome N Bauman, S Akella, E Hann, R Morey, AS Schwartz, R Brown, ... Genome Announcements 6 (12), 10.1128/genomea. 00181-18, 2018 | 30 | 2018 |