| The complete sequence of a human Y chromosome A Rhie, S Nurk, M Cechova, SJ Hoyt, DJ Taylor, N Altemose, PW Hook, ... Nature 621 (7978), 344-354, 2023 | 114 | 2023 |
| A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y KDM Marta Tomaszkiewicz, Samarth Rangavittal, Monika Cechova, Rebeca Campos ... Genome Research, 2016 | 106 | 2016 |
| Analysis of plastid and mitochondrial DNA insertions in the nucleus (NUPTs and NUMTs) of six plant species: size, relative age and chromosomal localization M Michalovová, B Vyskot, E Kejnovsky Heredity 111 (4), 314-320, 2013 | 106 | 2013 |
| Expansion of microsatellites on evolutionary young Y chromosome E Kejnovský, M Michalovova, P Steflova, I Kejnovska, S Manzano, ... PloS one 8 (1), e45519, 2013 | 64 | 2013 |
| Long-read sequencing technology indicates genome-wide effects of non-B DNA on polymerization speed and error rate WM Guiblet, MA Cremona, M Cechova, RS Harris, I Kejnovská, ... Genome Research 28 (12), 1767-1778, 2018 | 59 | 2018 |
| Noise-cancelling repeat finder: uncovering tandem repeats in error-prone long-read sequencing data KDM Robert S Harris, Monika Cechova Bioinformatics 35 (22), 4809-4811, 2019 | 45 | 2019 |
| High Satellite Repeat Turnover in Great Apes Studied with Short- and Long-Read Technologies KDM Monika Cechova, Robert S Harris, Marta Tomaszkiewicz, Barbara ... Molecular Biology and Evolution 36 (11), 2415-2431, 2019 | 40 | 2019 |
| Dynamic evolution of great ape Y chromosomes KDM Monika Cechova, Rahulsimham Vegesna, Marta Tomaszkiewicz, Robert S ... Proceedings of the National Academy of Sciences, 2020 | 26* | 2020 |
| RecoverY: k-mer-based read classification for Y-chromosome-specific sequencing and assembly PM Samarth Rangavittal, Robert S. Harris, Monika Cechova, Marta ... Bioinformatics https://doi.org/10.1093/bioinformatics/btx771, 2017 | 24* | 2017 |
| Fully automated pipeline for detection of sex linked genes using RNA-Seq data M Michalovova, Z Kubat, R Hobza, B Vyskot, E Kejnovsky BMC bioinformatics 16, 1-8, 2015 | 15 | 2015 |
| The complete sequence and comparative analysis of ape sex chromosomes KD Makova, BD Pickett, RS Harris, GA Hartley, M Cechova, K Pal, S Nurk, ... bioRxiv, 2023.11. 30.569198, 2023 | 8 | 2023 |
| Accurate sequencing of DNA motifs able to form alternative (non-B) structures MH Weissensteiner, MA Cremona, WM Guiblet, N Stoler, RS Harris, ... Genome research 33 (6), 907-922, 2023 | 8* | 2023 |
| Probably correct: rescuing repeats with short and long reads M Cechova Genes 12 (1), 48, 2020 | 8 | 2020 |
| Ten simple rules for biologists initiating a collaboration with computer scientists M Cechova Plos Computational Biology, 2020 | 6 | 2020 |
| Satellite DNAs and human sex chromosome variation M Cechova, KH Miga Seminars in cell & developmental biology 128, 15-25, 2022 | 5 | 2022 |
| HiC-TE: a computational pipeline for Hi-C data analysis to study the role of repeat family interactions in the genome 3D organization M Lexa, M Cechova, SH Nguyen, P Jedlicka, V Tokan, Z Kubat, R Hobza, ... Bioinformatics 38 (16), 4030-4032, 2022 | 3* | 2022 |
| Comprehensive variant discovery in the era of complete human reference genomes M Cechova, KH Miga Nature methods 20 (1), 17-19, 2023 | 2 | 2023 |
| Multiple sequence alignments of great ape Y chromosomes and of great ape X and Y chromosomes M Cechova, KD Makova, RS Harris | 1 | 2020 |
| Boosting the potential of cattle breeding using molecular biology, genetics, and bioinformatics approaches – a review M Čechová, M Andrlíková ACTA VET. BRNO 90, 145–154, 2021 | | 2021 |
| Accessing the Inaccessible: Y Chromosome and Heterochromatin in Genomes of Great Apes M Cechova The Pennsylvania State University, 2020 | | 2020 |
Kateryna MakovaProfessor of Biology, Penn State UniversityVerified email at psu.edu
