Yosuke Nishimura
Yosuke Nishimura
Verified email at aori.u-tokyo.ac.jp
TitleCited byYear
Drug target prediction using adverse event report systems: a pharmacogenomic approach
M Takarabe, M Kotera, Y Nishimura, S Goto, Y Yamanishi
Bioinformatics 28 (18), i611-i618, 2012
972012
Linking virus genomes with host taxonomy
T Mihara, Y Nishimura, Y Shimizu, H Nishiyama, G Yoshikawa, H Uehara, ...
Viruses 8 (3), 66, 2016
652016
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains
T Katayama, MD Wilkinson, KF Aoki-Kinoshita, S Kawashima, ...
Journal of biomedical semantics 5 (1), 5, 2014
442014
Environmental viral genomes shed new light on virus-host interactions in the ocean
Y Nishimura, H Watai, T Honda, T Mihara, K Omae, S Roux, ...
Msphere 2 (2), e00359-16, 2017
242017
ViPTree: the viral proteomic tree server
Y Nishimura, T Yoshida, M Kuronishi, H Uehara, H Ogata, S Goto
Bioinformatics 33 (15), 2379-2380, 2017
212017
Two Asian jumbo phages, ϕRSL2 and ϕRSF1, infect Ralstonia solanacearum and show common features of ϕKZ-related phages
A Bhunchoth, R Blanc-Mathieu, T Mihara, Y Nishimura, A Askora, ...
Virology 494, 56-66, 2016
182016
Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan
T Yoshida, Y Nishimura, H Watai, N Haruki, D Morimoto, H Kaneko, ...
The ISME journal 12 (5), 1287, 2018
122018
Genome-wide analysis of plant UGT family based on sequence and substrate information
Y NISHIMURA, T TOKIMATSU, M KOTERA, S GOTO, M KANEHISA
Genome Informatics 2010: Genome Informatics Series Vol. 24, 127-138, 2010
5*2010
PIERO ontology for analysis of biochemical transformations: effective implementation of reaction information in the IUBMB enzyme list
M Kotera, Y Nishimura, ZI Nakagawa, A Muto, Y Moriya, S Okamoto, ...
Journal of bioinformatics and computational biology 12 (06), 1442001, 2014
42014
Photochemical characterization of a new heliorhodopsin from the gram-negative eubacterium Bellilinea caldifistulae (BcHeR) and comparison with heliorhodopsin-48C12
A Shibukawa, K Kojima, Y Nakajima, Y Nishimura, S Yoshizawa, Y Sudo
Biochemistry, 2019
22019
Genome]resolved viral and cellular metagenomes revealed potential key virus]host interactions in a deep freshwater lake
Y Okazaki, Y Nishimura, T Yoshida, H Ogata, S Nakano
Environmental microbiology, 2019
2019
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services
T Katayama, S Kawashima, G Micklem, S Kawano, JD Kim, S Kocbek, ...
F1000Research 8 (1677), 1677, 2019
2019
Cooccurrence of Broad-and Narrow-Host-Range Viruses Infecting the Bloom-Forming Toxic Cyanobacterium Microcystis aeruginosa
D Morimoto, K Tominaga, Y Nishimura, N Yoshida, S Kimura, Y Sako, ...
Applied and environmental microbiology 85 (18), e01170-19, 2019
2019
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Articles 1–13