| Molecular simulations of mixed lipid bilayers with sphingomyelin, glycerophospholipids, and cholesterol I Bera, JB Klauda The Journal of Physical Chemistry B 121 (20), 5197-5208, 2017 | 61 | 2017 |
| Use of molecular dynamics simulations in structure-based drug discovery I Bera, PV Payghan Current pharmaceutical design 25 (31), 3339-3349, 2019 | 41 | 2019 |
| Aristolochic acid and its derivatives as inhibitors of snake venom L-amino acid oxidase P Bhattacharjee, I Bera, S Chakraborty, N Ghoshal, D Bhattacharyya Toxicon 138, 1-17, 2017 | 29 | 2017 |
| Combinatorial library enumeration and lead hopping using comparative interaction fingerprint analysis and classical 2D QSAR methods for seeking novel GABAA α3 modulators RSK Vijayan, I Bera, M Prabu, S Saha, N Ghoshal Journal of chemical information and modeling 49 (11), 2498-2511, 2009 | 23 | 2009 |
| Exploring the structure of opioid receptors with homology modeling based on single and multiple templates and subsequent docking: A comparative study I Bera, A Laskar, N Ghoshal Journal of molecular modeling 17, 1207-1221, 2011 | 20 | 2011 |
| Modeling the Closed and Open State Conformations of the GABAA Ion Channel - Plausible Structural Insights for Channel Gating RSK Vijayan, N Trivedi, SN Roy, I Bera, P Manoharan, PV Payghan, ... Journal of chemical information and modeling 52 (11), 2958-2969, 2012 | 15 | 2012 |
| Relationship between protein digestibility and the proteolysis of legume proteins during seed germination I Bera, M O’Sullivan, D Flynn, DC Shields Molecules 28 (7), 3204, 2023 | 11 | 2023 |
| A study of interface roughness of heteromeric obligate and non-obligate protein-protein complexes I Bera, S Ray Bioinformation 4 (5), 210, 2009 | 11 | 2009 |
| Computational studies for structure-based drug Designing Against Transmembrane Receptors: pLGICs and class A GPCRs PV Payghan, I Bera, D Bhattacharyya, N Ghoshal Frontiers in Physics 6, 52, 2018 | 9 | 2018 |
| Capturing state-dependent dynamic events of GABAA-receptors: a microscopic look into the structural and functional insights PV Payghan, I Bera, D Bhattacharyya, N Ghoshal Journal of Biomolecular Structure and Dynamics 34 (8), 1818-1837, 2016 | 8 | 2016 |
| Identification of novel hits as highly prospective dual agonists for mu and kappa opioid receptors: an integrated in silico approach I Bera, MV Marathe, PV Payghan, N Ghoshal Journal of Biomolecular Structure and Dynamics 36 (2), 279-301, 2018 | 7 | 2018 |
| Indirect read-out of the promoter DNA by RNA polymerase in the closed complex S Debnath, NS Roy, I Bera, N Ghoshal, S Roy Nucleic acids research 41 (1), 366-377, 2013 | 7 | 2013 |
| Structural events in a bacterial uniporter leading to translocation of glucose to the cytosol I Bera, JB Klauda Journal of molecular biology 430 (18), 3337-3352, 2018 | 6 | 2018 |
| Current Therapy and Computational Drug Designing Approaches for Neurodegenerative Diseases-with Focus on Alzheimer’s and Parkinson’s. I Bera Current Signal Transduction Therapy 14 (2), 122-128, 2019 | 4 | 2019 |
| Enhanced basepair dynamics pre-disposes protein-assisted flips of key bases in DNA strand separation during transcription initiation NS Roy, S Debnath, A Chakraborty, P Chakraborty, I Bera, R Ghosh, ... Physical Chemistry Chemical Physics 20 (14), 9449-9459, 2018 | 3 | 2018 |
| Interplay of specific trans-and Juxtamembrane interfaces in Plexin A3 dimerization and signal transduction R Barton, P Khakbaz, I Bera, JB Klauda, MK Iovine, BW Berger Biochemistry 55 (35), 4928-4938, 2016 | 3 | 2016 |
| Positively charged nitrogen is not indispensable requirement for binding of nitrogenous κ-opioid agonists: insights from docking studies I Bera, N Ghoshal Letters in Drug Design & Discovery 11 (6), 809-813, 2014 | 3 | 2014 |
| Proteolysis pattern of plant seed proteins; an insight from the endogenous peptidome of germinated and ungerminated chickpeas using LC-MS/MS I Bera, M O'Sullivan, D Shields Journal of Biological Chemistry 299 (3), S363-S364, 2023 | | 2023 |
| Structural Events in a Bacterial Uniporter Leading to Translocation of Glucose Inside the Cytosol I Bera, JB Klauda Biophysical Journal 114 (3), 150a, 2018 | | 2018 |
| All-atom simulation studies on lipid bilayers, composed of sphingomyelin, glycerophospholipids and cholesterol I Bera, J Klauda ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 254, 2017 | | 2017 |
