Frederic Bertels
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Automated Reconstruction of Whole-Genome Phylogenies from Short-Sequence Reads
F Bertels, OK Silander, M Pachkov, PB Rainey, E van Nimwegen
Molecular biology and evolution 31 (5), 1077-1088, 2014
Genomic Analysis of the Kiwifruit Pathogen Pseudomonas syringae pv. actinidiae Provides Insight into the Origins of an Emergent Plant Disease
HC McCann, EHA Rikkerink, F Bertels, M Fiers, A Lu, J Rees-George, ...
PLoS pathogens 9 (7), e1003503, 2013
Global identification of yeast chromosome interactions using Genome conformation capture
CDM Rodley, F Bertels, B Jones, JM O'Sullivan
Fungal Genetics and Biology 46 (11), 879-886, 2009
The perils of plenty: what are we going to do with all these genes?
A Rodrigo, F Bertels, J Heled, R Noder, H Shearman, P Tsai
Philosophical Transactions of the Royal Society of London B: Biological …, 2008
Within-genome evolution of REPINs: a new family of miniature mobile DNA in bacteria
F Bertels, PB Rainey
PLoS genetics 7 (6), e1002132, 2011
Adaptive Divergence in Experimental Populations of Pseudomonas fluorescens. V. Insight into the Niche Specialist Fuzzy Spreader Compels Revision of the Model Pseudomonas Radiation
GC Ferguson, F Bertels, PB Rainey
Genetics 195 (4), 1319-1335, 2013
Bistability in a Metabolic Network Underpins the De Novo Evolution of Colony Switching in Pseudomonas fluorescens
J Gallie, E Libby, F Bertels, P Remigi, CB Jendresen, GC Ferguson, ...
PLoS biology 13 (3), e1002109, 2015
Dissecting HIV Virulence: Heritability of Setpoint Viral Load, CD4+ T-Cell Decline, and Per-Parasite Pathogenicity
F Bertels, A Marzel, G Leventhal, V Mitov, J Fellay, HF Günthard, J Böni, ...
Molecular biology and evolution 35 (1), 27-37, 2018
Parallel evolution of HIV-1 in a long-term experiment
F Bertels, C Leemann, KJ Metzner, RR Regoes
Molecular biology and evolution 36 (11), 2400-2414, 2019
Curiosities of REPINs and RAYTs
F Bertels, PB Rainey
Mobile Genetic Elements 1 (4), 262-301, 2011
Discovering complete quasispecies in bacterial genomes
F Bertels, CS Gokhale, A Traulsen
Genetics 206 (4), 2149-2157, 2017
Transposable elements promote the evolution of genome streamlining
B van Dijk, F Bertels, L Stolk, N Takeuchi, PB Rainey
Philosophical Transactions of the Royal Society B 377 (1842), 20200477, 2022
Repeated phenotypic evolution by different genetic routes in Pseudomonas fluorescens SBW25.
J Gallie, F Bertels, P Remigi, GC Ferguson, S Nestmann, PB Rainey
Molecular biology and evolution, 2019
Estimating the mutational fitness effects distribution during early HIV infection
E Bons, F Bertels, RR Regoes
Virus evolution 4 (2), vey029, 2018
Recombination of Virulence Genes in Divergent Acidovorax avenae Strains That Infect a Common Host
Q Zeng, J Wang, F Bertels, PR Giordano, MI Chilvers, RB Huntley, ...
Molecular Plant-Microbe Interactions 30 (10), 813-828, 2017
Convergent evolution as an indicator for selection during acute HIV-1 infection
F Bertels, KJ Metzner, RR Regoes
PCI Evolutionary Biology, 2018
Identification and characterization of domesticated bacterial transposases
F Bertels, J Gallie, PB Rainey
Genome Biology and Evolution 9 (8), 2110-2121, 2017
How sequence populations persist inside bacterial genomes
HJ Park, CS Gokhale, F Bertels
Genetics 217 (4), iyab027, 2021
Stepwise Evolution of E. coli C and ΦX174 Reveals Unexpected Lipopolysaccharide (LPS) Diversity
J Romeyer Dherbey, L Parab, J Gallie, F Bertels
Molecular Biology and Evolution 40 (7), msad154, 2023
Ancient Darwinian replicators nested within eubacterial genomes
F Bertels, PB Rainey
BioEssays 45 (2), 2200085, 2023
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