フォロー
Toru Niina
Toru Niina
RIKEN BDR
確認したメール アドレス: theory.biophys.kyoto-u.ac.jp - ホームページ
タイトル
引用先
引用先
DNA sliding in nucleosomes via twist defect propagation revealed by molecular simulations
GB Brandani, T Niina, C Tan, S Takada
Nucleic acids research 46 (6), 2788-2801, 2018
792018
Sequence-dependent nucleosome sliding in rotation-coupled and uncoupled modes revealed by molecular simulations
T Niina, GB Brandani, C Tan, S Takada
PLoS computational biology 13 (12), e1005880, 2017
532017
Molecular dynamics simulation of proton-transfer coupled rotations in ATP synthase FO motor
S Kubo, T Niina, S Takada
Scientific reports 10 (1), 8225, 2020
372020
Flexible fitting of biomolecular structures to atomic force microscopy images via biased molecular simulations
T Niina, S Fuchigami, S Takada
Journal of Chemical Theory and Computation 16 (2), 1349-1358, 2020
362020
Rigid-body fitting to atomic force microscopy images for inferring probe shape and biomolecular structure
T Niina, Y Matsunaga, S Takada
PLoS Computational Biology 17 (7), e1009215, 2021
162021
Particle filter method to integrate high-speed atomic force microscopy measurements with biomolecular simulations
S Fuchigami, T Niina, S Takada
Journal of Chemical Theory and Computation 16 (10), 6609-6619, 2020
142020
Case report: Bayesian statistical inference of experimental parameters via biomolecular simulations: atomic force microscopy
S Fuchigami, T Niina, S Takada
Frontiers in Molecular Biosciences 8, 636940, 2021
102021
FO-F1 coupling and symmetry mismatch in ATP synthase resolved in every FO rotation step
S Kubo, T Niina, S Takada
Biophysical Journal 122 (14), 2898-2909, 2023
72023
Cooperation among c-subunits of FoF1-ATP synthase in rotation-coupled proton translocation
N Mitome, S Kubo, S Ohta, H Takashima, Y Shigefuji, T Niina, S Takada
Elife 11, e69096, 2022
52022
The stoichiometric interaction model for mesoscopic MD simulations of liquid-liquid phase separation
Y Murata, T Niina, S Takada
Biophysical Journal 121 (22), 4382-4393, 2022
42022
Biomolecular Data Assimilation to Integrate High-speed Atomic Force Microscopy Measurement and Molecular Simulation
S Fuchigami, T Niina, S Takada
Biophysical Journal 118 (3), 33a, 2020
12020
The stoichiometric interaction model for mesoscopic molecular dynamics simulations of liquid-liquid phase separation
Y Murata, T Niina, S Takada
bioRxiv, 2022.04. 19.488761, 2022
2022
Periortree: An Extention of R-Tree for Periodic Boundary Conditions
T Niina
arXiv preprint arXiv:1712.02977, 2017
2017
現在システムで処理を実行できません。しばらくしてからもう一度お試しください。
論文 1–13