| DNA sliding in nucleosomes via twist defect propagation revealed by molecular simulations GB Brandani, T Niina, C Tan, S Takada Nucleic acids research 46 (6), 2788-2801, 2018 | 80 | 2018 |
| Sequence-dependent nucleosome sliding in rotation-coupled and uncoupled modes revealed by molecular simulations T Niina, GB Brandani, C Tan, S Takada PLoS computational biology 13 (12), e1005880, 2017 | 54 | 2017 |
| Molecular dynamics simulation of proton-transfer coupled rotations in ATP synthase FO motor S Kubo, T Niina, S Takada Scientific reports 10 (1), 8225, 2020 | 38 | 2020 |
| Flexible fitting of biomolecular structures to atomic force microscopy images via biased molecular simulations T Niina, S Fuchigami, S Takada Journal of Chemical Theory and Computation 16 (2), 1349-1358, 2020 | 36 | 2020 |
| Rigid-body fitting to atomic force microscopy images for inferring probe shape and biomolecular structure T Niina, Y Matsunaga, S Takada PLoS Computational Biology 17 (7), e1009215, 2021 | 16 | 2021 |
| Particle filter method to integrate high-speed atomic force microscopy measurements with biomolecular simulations S Fuchigami, T Niina, S Takada Journal of Chemical Theory and Computation 16 (10), 6609-6619, 2020 | 14 | 2020 |
| Case report: Bayesian statistical inference of experimental parameters via biomolecular simulations: atomic force microscopy S Fuchigami, T Niina, S Takada Frontiers in Molecular Biosciences 8, 636940, 2021 | 10 | 2021 |
| FO-F1 coupling and symmetry mismatch in ATP synthase resolved in every FO rotation step S Kubo, T Niina, S Takada Biophysical Journal 122 (14), 2898-2909, 2023 | 7 | 2023 |
| Cooperation among c-subunits of FoF1-ATP synthase in rotation-coupled proton translocation N Mitome, S Kubo, S Ohta, H Takashima, Y Shigefuji, T Niina, S Takada Elife 11, e69096, 2022 | 5 | 2022 |
| The stoichiometric interaction model for mesoscopic MD simulations of liquid-liquid phase separation Y Murata, T Niina, S Takada Biophysical Journal 121 (22), 4382-4393, 2022 | 4 | 2022 |
| Biomolecular Data Assimilation to Integrate High-speed Atomic Force Microscopy Measurement and Molecular Simulation S Fuchigami, T Niina, S Takada Biophysical Journal 118 (3), 33a, 2020 | 1 | 2020 |
| The stoichiometric interaction model for mesoscopic molecular dynamics simulations of liquid-liquid phase separation Y Murata, T Niina, S Takada bioRxiv, 2022.04. 19.488761, 2022 | | 2022 |
| Periortree: An Extention of R-Tree for Periodic Boundary Conditions T Niina arXiv preprint arXiv:1712.02977, 2017 | | 2017 |
Shoji TakadaKyoto UniversityVerified email at biophys.kyoto-u.ac.jp
