Vinhthuy Phan
Vinhthuy Phan
Associate Professor of Computer Science, University of Memphis
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In search of optimal codes for DNA computing
MH Garzon, V Phan, S Roy, AJ Neel
International Workshop on DNA-Based Computers, 143-156, 2006
Chemical genomics of cancer chemopreventive dithiolethiones
QT Tran, L Xu, V Phan, SB Goodwin, M Rahman, VX Jin, CH Sutter, ...
Carcinogenesis 30 (3), 480-486, 2009
Coloring graphs with a general heuristic search engine
V Phan, S Skiena
Computational Symposium on Graph Coloring and its Generalizations, 92-99, 2002
On codeword design in metric DNA spaces
V Phan, MH Garzon
Natural Computing 8 (3), 571-588, 2009
Latent Semantic Indexing of PubMed abstracts for identification of transcription factor candidates from microarray derived gene sets
S Roy, K Heinrich, V Phan, MW Berry, R Homayouni
BMC bioinformatics 12 (10), 1-13, 2011
Dealing with errors in interactive sequencing by hybridization
VT Phan, SS Skiena
Bioinformatics 17 (10), 862-870, 2001
“Reasoning” and “talking” DNA: can DNA understand english?
KC Bobba, AJ Neel, V Phan, MH Garzon
International Workshop on DNA-Based Computers, 337-349, 2006
Sensitivity and capacity of microarray encodings
MH Garzon, V Phan, KC Bobba, R Kontham
International Workshop on DNA-Based Computers, 81-95, 2005
Using 16S rRNA gene as marker to detect unknown bacteria in microbial communities
Q Tran, DT Pham, V Phan
BMC bioinformatics 18 (14), 155-161, 2017
Optimal DNA codes for computing and self-assembly
MH Garzon, V Phan, A Neel
International Journal of Nanotechnology and Molecular Computation (IJNMC) 1 …, 2009
A model for analyzing black-box optimization
V Phan, S Skiena, P Sumazin
Workshop on Algorithms and Data Structures, 424-438, 2003
Analyzing microarray data with transitive directed acyclic graphs
V Phan, E Olusegun George, QT Tran, S Goodwin, S Bodreddigari, ...
Journal of Bioinformatics and Computational Biology 7 (01), 135-156, 2009
How genome complexity can explain the difficulty of aligning reads to genomes
V Phan, S Gao, Q Tran, NS Vo
BMC bioinformatics 16 (17), 1-15, 2015
A time-sensitive system for black-box combinatorial optimization
V Phan, P Sumazin, S Skiena
Workshop on Algorithm Engineering and Experimentation, 16-28, 2002
Analysis of optimal alignments unfolds aligners’ bias in existing variant profiles
Q Tran, S Gao, V Phan
BMC bioinformatics 17 (13), 29-36, 2016
RandAL: a randomized approach to aligning DNA sequences to reference genomes
NS Vo, Q Tran, N Niraula, V Phan
BMC genomics 15 (5), 1-10, 2014
How genome complexity can explain the hardness of aligning reads to genomes
V Phan, S Gao, Q Tran, NS Vo
2014 IEEE 4th International Conference on Computational Advances in Bio and …, 2014
The capacity of DNA for information encoding
V Phan, MH Garzon
International Workshop on DNA-Based Computers, 281-292, 2004
Code4brownies: An active learning solution for teaching programming and problem solving in the classroom
V Phan, E Hicks
Proceedings of the 23rd Annual ACM Conference on Innovation and Technology …, 2018
An accurate and fast alignment-free method for profiling microbial communities
DT Pham, S Gao, V Phan
Journal of bioinformatics and computational biology 15 (03), 1740001, 2017
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