In search of optimal codes for DNA computing MH Garzon, V Phan, S Roy, AJ Neel DNA Computing: 12th International Meeting on DNA Computing, DNA12, Seoul …, 2006 | 39 | 2006 |
Chemical genomics of cancer chemopreventive dithiolethiones QT Tran, L Xu, V Phan, SB Goodwin, M Rahman, VX Jin, CH Sutter, ... Carcinogenesis 30 (3), 480-486, 2009 | 36 | 2009 |
On codeword design in metric DNA spaces V Phan, MH Garzon Natural Computing 8, 571-588, 2009 | 34 | 2009 |
Using 16S rRNA gene as marker to detect unknown bacteria in microbial communities Q Tran, DT Pham, V Phan BMC bioinformatics 18, 155-161, 2017 | 31 | 2017 |
Coloring graphs with a general heuristic search engine V Phan, S Skiena Computational Symposium on Graph Coloring and its Generalizations, 92-99, 2002 | 28 | 2002 |
Latent Semantic Indexing of PubMed abstracts for identification of transcription factor candidates from microarray derived gene sets S Roy, K Heinrich, V Phan, MW Berry, R Homayouni BMC bioinformatics 12, 1-13, 2011 | 26 | 2011 |
Dealing with errors in interactive sequencing by hybridization VT Phan, SS Skiena Bioinformatics 17 (10), 862-870, 2001 | 19 | 2001 |
Assembling reads improves taxonomic classification of species Q Tran, V Phan Genes 11 (8), 946, 2020 | 15 | 2020 |
How genome complexity can explain the difficulty of aligning reads to genomes V Phan, S Gao, Q Tran, NS Vo BMC bioinformatics 16, 1-15, 2015 | 15 | 2015 |
Analyzing microarray data with transitive directed acyclic graphs V Phan, E Olusegun George, QT Tran, S Goodwin, S Bodreddigari, ... Journal of Bioinformatics and Computational Biology 7 (01), 135-156, 2009 | 15 | 2009 |
“Reasoning” and “Talking” DNA: Can DNA understand english? KC Bobba, AJ Neel, V Phan, MH Garzon DNA Computing: 12th International Meeting on DNA Computing, DNA12, Seoul …, 2006 | 14 | 2006 |
Code4brownies: An active learning solution for teaching programming and problem solving in the classroom V Phan, E Hicks Proceedings of the 23rd Annual ACM Conference on Innovation and Technology …, 2018 | 13 | 2018 |
Optimal DNA codes for computing and self-assembly MH Garzon, V Phan, A Neel International Journal of Nanotechnology and Molecular Computation (IJNMC) 1 …, 2009 | 13 | 2009 |
Sensitivity and capacity of microarray encodings MH Garzon, V Phan, KC Bobba, R Kontham DNA Computing: 11th International Workshop on DNA Computing, DNA11, London …, 2006 | 12 | 2006 |
A model for analyzing black-box optimization V Phan, S Skiena, P Sumazin Algorithms and Data Structures: 8th International Workshop, WADS 2003 …, 2003 | 11 | 2003 |
A time-sensitive system for black-box combinatorial optimization V Phan, P Sumazin, S Skiena Workshop on Algorithm Engineering and Experimentation, 16-28, 2002 | 11 | 2002 |
Analysis of optimal alignments unfolds aligners’ bias in existing variant profiles Q Tran, S Gao, V Phan BMC bioinformatics 17, 29-36, 2016 | 8 | 2016 |
RandAL: a randomized approach to aligning DNA sequences to reference genomes NS Vo, Q Tran, N Niraula, V Phan BMC genomics 15, 1-10, 2014 | 8 | 2014 |
How genome complexity can explain the hardness of aligning reads to genomes V Phan, S Gao, Q Tran, NS Vo 2014 IEEE 4th International Conference on Computational Advances in Bio and …, 2014 | 8 | 2014 |
Try that again! how a second attempt on in-class coding problems benefits students in CS1 A Cook, A Zaman, E Hicks, K Malasri, V Phan Proceedings of the 53rd ACM Technical Symposium on Computer Science …, 2022 | 7 | 2022 |