Toshiya Kokaji
Toshiya Kokaji
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Robustness and compensation of information transmission of signaling pathways
S Uda, TH Saito, T Kudo, T Kokaji, T Tsuchiya, H Kubota, Y Komori, ...
Science 341 (6145), 558-561, 2013
Trans-omic analysis reveals selective responses to induced and basal insulin across signaling, transcriptional, and metabolic networks
K Kawata, A Hatano, K Yugi, H Kubota, T Sano, M Fujii, Y Tomizawa, ...
IScience 7, 212-229, 2018
Trans-omic analysis reveals obesity-associated dysregulation of inter-organ metabolic cycles between the liver and skeletal muscle
R Egami, T Kokaji, A Hatano, K Yugi, M Eto, K Morita, S Ohno, M Fujii, ...
IScience 24 (3), 102217, 2021
Transomics analysis reveals allosteric and gene regulation axes for altered hepatic glucose-responsive metabolism in obesity
T Kokaji, A Hatano, Y Ito, K Yugi, M Eto, K Morita, S Ohno, M Fujii, ...
Science Signaling 13 (660), eaaz1236, 2020
Multi-omics-based label-free metabolic flux inference reveals obesity-associated dysregulatory mechanisms in liver glucose metabolism
S Uematsu, S Ohno, KY Tanaka, A Hatano, T Kokaji, Y Ito, H Kubota, ...
Iscience 25 (2), 103787, 2022
Reconstruction of global regulatory network from signaling to cellular functions using phosphoproteomic data
K Kawata, K Yugi, A Hatano, T Kokaji, Y Tomizawa, M Fujii, S Uda, ...
Genes to Cells 24 (1), 82-93, 2019
Trans-omics analysis of insulin action reveals a cell growth subnetwork which co-regulates anabolic processes
A Terakawa, Y Hu, T Kokaji, K Yugi, K Morita, S Ohno, Y Pan, Y Bai, ...
Iscience 25 (5), 104231, 2022
Acquisition of neural fate by combination of BMP blockade and chromatin modification
ALC Ong, T Kokaji, A Kishi, Y Takihara, T Shinozuka, R Shimamoto, ...
Iscience 26 (10), 2023
Comparison of hepatic responses to glucose perturbation between healthy and obese mice based on the edge type of network structures
Y Ito, S Uda, T Kokaji, A Hirayama, T Soga, Y Suzuki, S Kuroda, H Kubota
Scientific Reports 13 (1), 4758, 2023
Optogenetic decoding of Akt2-regulated metabolic signaling pathways in skeletal muscle cells using transomics analysis
G Kawamura, T Kokaji, K Kawata, Y Sekine, Y Suzuki, T Soga, Y Ueda, ...
Science Signaling 16 (773), eabn0782, 2023
Trans-omic analysis reveals opposite metabolic dysregulation between feeding and fasting in liver associated with obesity
Y Bai, K Morita, T Kokaji, A Hatano, S Ohno, R Egami, Y Pan, D Li, K Yugi, ...
iScience, 2023
DNA hypomethylation characterizes genes encoding tissue-dominant functional proteins in liver and skeletal muscle
H Maehara, T Kokaji, A Hatano, Y Suzuki, M Matsumoto, KI Nakayama, ...
Scientific Reports 13 (1), 19118, 2023
In vivo transomic analyses of glucose-responsive metabolism in skeletal muscle reveal core differences between the healthy and obese states
T Kokaji, M Eto, A Hatano, K Yugi, K Morita, S Ohno, M Fujii, K Hironaka, ...
Scientific reports 12 (1), 1-19, 2022
Construction of an inter-organ transomic network for whole-body metabolism
T Kokaji, S Kuroda
Current Opinion in Endocrine and Metabolic Research 25, 100361, 2022
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