| iMem-2LSAAC: a two-level model for discrimination of membrane proteins and their types by extending the notion of SAAC into Chou's pseudo amino acid composition M Arif, M Hayat, Z Jan Journal of Theoretical Biology 442, 11-21, 2018 | 110 | 2018 |
| DBPPred-PDSD: machine learning approach for prediction of DNA-binding proteins using Discrete Wavelet Transform and optimized integrated features space F Ali, M Kabir, M Arif, ZNK Swati, ZU Khan, M Ullah, DJ Yu Chemometrics and Intelligent Laboratory Systems 182, 21-30, 2018 | 59 | 2018 |
| TargetCPP: accurate prediction of cell-penetrating peptides from optimized multi-scale features using gradient boost decision tree M Arif, S Ahmad, F Ali, G Fang, M Li, DJ Yu Journal of computer-aided molecular design 34, 841-856, 2020 | 54 | 2020 |
| Intelligent computational method for discrimination of anticancer peptides by incorporating sequential and evolutionary profiles information M Kabir, M Arif, S Ahmad, Z Ali, ZNK Swati, DJ Yu Chemometrics and Intelligent Laboratory Systems 182, 158-165, 2018 | 50 | 2018 |
| Pred-BVP-Unb: Fast prediction of bacteriophage Virion proteins using un-biased multi-perspective properties with recursive feature elimination M Arif, F Ali, S Ahmad, M Kabir, Z Ali, M Hayat Genomics 112 (2), 1565-1574, 2020 | 46 | 2020 |
| SDBP-Pred: Prediction of single-stranded and double-stranded DNA-binding proteins by extending consensus sequence and K-segmentation strategies into PSSM F Ali, M Arif, ZU Khan, M Kabir, S Ahmed, DJ Yu Analytical biochemistry 589, 113494, 2020 | 35 | 2020 |
| StackACPred: Prediction of anticancer peptides by integrating optimized multiple feature descriptors with stacked ensemble approach M Arif, S Ahmed, F Ge, M Kabir, YD Khan, DJ Yu, M Thafar Chemometrics and Intelligent Laboratory Systems 220, 104458, 2022 | 33 | 2022 |
| DeepPPSite: a deep learning-based model for analysis and prediction of phosphorylation sites using efficient sequence information S Ahmed, M Kabir, M Arif, ZU Khan, DJ Yu Analytical biochemistry 612, 113955, 2021 | 29 | 2021 |
| Prediction of membrane protein types by exploring local discriminative information from evolutionary profiles DJY Muhammad Kabir, Muhammad Arif, Farman Ali, Saeed Ahmad, Zar Nawab Khan Swati Analytical biochemistry 564, 123-132, 2019 | 24 | 2019 |
| An Integrated Feature Selection Algorithm for Cancer Classification using Gene Expression Data DJY Saeed Ahmed, Muhammad Kabir, Zakir Ali, Muhammad Arif, Farman Ali Combinatorial Chemistry & High Throughput Screening 21 (9), pp. 645(15), 2018 | 23* | 2018 |
| MutTMPredictor: robust and accurate cascade XGBoost classifier for prediction of mutations in transmembrane proteins F Ge, YH Zhu, J Xu, A Muhammad, J Song, DJ Yu Computational and Structural Biotechnology Journal 19, 6400-6416, 2021 | 20 | 2021 |
| Lung-EffNet: Lung cancer classification using EfficientNet from CT-scan images R Raza, F Zulfiqar, MO Khan, M Arif, A Alvi, MA Iftikhar, T Alam Engineering Applications of Artificial Intelligence 126, 106902, 2023 | 19 | 2023 |
| Improving secretory proteins prediction in Mycobacterium tuberculosis using the unbiased dipeptide composition with support vector machine S Ahmed, M Kabir, M Arif, Z Ali, F Ali, ZNK Swati International Journal of Data Mining and Bioinformatics 21 (3), 212-229, 2018 | 19 | 2018 |
| Prediction of disease-associated nsSNPs by integrating multi-scale ResNet models with deep feature fusion F Ge, Y Zhang, J Xu, A Muhammad, J Song, DJ Yu Briefings in Bioinformatics 23 (1), bbab530, 2022 | 15 | 2022 |
| DeepCPPred: a deep learning framework for the discrimination of cell-penetrating peptides and their uptake efficiencies M Arif, M Kabir, S Ahmed, A Khan, F Ge, A Khelifi, DJ Yu IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (5 …, 2021 | 15 | 2021 |
| PredAoDP: accurate identification of antioxidant proteins by fusing different descriptors based on evolutionary information with support vector machine S Ahmed, M Arif, M Kabir, K Khan, YD Khan Chemometrics and Intelligent Laboratory Systems 228, 104623, 2022 | 11 | 2022 |
| TargetMM: accurate missense mutation prediction by utilizing local and global sequence information with classifier ensemble F Ge, J Hu, YH Zhu, M Arif, DJ Yu Combinatorial Chemistry & High Throughput Screening 25 (1), 38-52, 2022 | 9 | 2022 |
| DeepnsSNPs: Accurate prediction of non-synonymous single-nucleotide polymorphisms by combining multi-scale convolutional neural network and residue environment information F Ge, A Muhammad, DJ Yu Chemometrics and Intelligent Laboratory Systems 215, 104326, 2021 | 9 | 2021 |
| Prediction of human phosphorylated proteins by extracting multi-perspective discriminative features from the evolutionary profile and physicochemical properties through LFDA S Ahmed, M Kabir, M Arif, Z Ali, ZNK Swati Chemometrics and Intelligent Laboratory Systems 203, 104066, 2020 | 9 | 2020 |
| Improving DNA-binding protein prediction using three-part sequence-order feature extraction and a deep neural network algorithm J Hu, WW Zeng, NX Jia, M Arif, DJ Yu, GJ Zhang Journal of Chemical Information and Modeling 63 (3), 1044-1057, 2023 | 8 | 2023 |
Dong-Jun YuNanjing University of Science and TechnologyVerified email at njust.edu.cn
